X. Shirley Liu - Citegraph

Author Info

Name	Affiliation	Papers
X. SHIRLEY LIU	Harvard Univ, Sch Publ Hlth, Dana Farber Canc Inst, Dept Biostat & Computat Biol, Boston, MA 02115 USA	33
Collaborators	Citations	PageRank
216	451	50.05
Referers	Referees	References
1433	704	157

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Publications (33 rows)

Collaborators (100 rows)

Referers (100 rows)

Referees (100 rows)

Title	Citations	PageRank	Year
Neural Network Architecture Search With Amber	1	0.34	2021
TIMER2.0 for analysis of tumor-infiltrating immune cells.	2	0.68	2020
CRISPR Screens Identify Essential Cell Growth Mediators in BRAF Inhibitor-resistant Melanoma	0	0.34	2020
Cistrome Data Browser: Expanded Datasets And New Tools For Gene Regulatory Analysis	0	0.34	2019
A Bayesian model for single cell transcript expression analysis on MERFISH data.	0	0.34	2019
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.	0	0.34	2019
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.	1	0.36	2018
Improved design and analysis of CRISPR knockout screens.	0	0.34	2018
Cistrome Data Browser: A Data Portal For Chip-Seq And Chromatin Accessibility Data In Human And Mouse	14	0.68	2017
CRISPR-DO for genome-wide CRISPR design and optimization.	0	0.34	2016
Predicting Anticancer Drug Responses Using A Dual-Layer Integrated Cell Line-Drug Network Model	19	1.00	2015
Comparative analysis of metazoan chromatin organization Open.	0	0.34	2014
CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse.	5	0.47	2014
Meeting report on YBPW 2014 (the 3rd Young Bioinformatics PIs Workshop)	0	0.34	2014
Computational methodology for ChIP-seq analysis.	1	0.36	2013
CistromeFinder for ChIP-seq and DNase-seq data reuse.	3	0.46	2013
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.	12	0.83	2012
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.	9	0.81	2012
DiNuP: a systematic approach to identify regions of differential nucleosome positioning.	4	0.56	2012
BINOCh: binding inference from nucleosome occupancy changes.	4	0.52	2011
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.	3	0.48	2011
CEAS: cis-regulatory element annotation system.	18	1.26	2009
xMAN: extreme MApping of OligoNucleotides.	2	0.40	2007
Getting Started In Tiling Microarray Analysis	6	0.72	2007
Microarray blob-defect removal improves array analysis	7	0.80	2007
Ceas: Cis-Regulatory Element Annotation System	9	1.88	2006
A boosting approach for motif modeling using ChIP-chip data.	21	1.28	2005
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.	38	5.33	2005
A suite of web-based programs to search for transcriptional regulatory motifs.	8	0.90	2004
BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.	246	21.58	2001
Pattern recognition of genomic features with microarrays: site typing of Mycobacterium tuberculosis strains.	4	1.22	2000
Automation and Integration of Components for Generalized Semantic Markup of Electronic Medical Texts	6	1.16	1999
Updating a bibliography using the related articles function within PubMed.	8	3.26	1998