| CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model | 0 | 0.34 | 2022 |
| RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data | 0 | 0.34 | 2022 |
| Accurate identification of bacteriophages from metagenomic data using Transformer | 0 | 0.34 | 2022 |
| Reconstructing viral haplotypes using long reads | 0 | 0.34 | 2022 |
| Bacteriophage Classification For Assembled Contigs Using Graph Convolutional Network | 0 | 0.34 | 2021 |
| The Lung Cancer Associated Micrornas And Single Nucleotides Polymorphisms: A Mendelian Randomization Analysis | 0 | 0.34 | 2020 |
| Improving the sensitivity of long read overlap detection using grouped short k-mer matches. | 0 | 0.34 | 2019 |
| Fast and accurate microRNA search using CNN. | 0 | 0.34 | 2019 |
| TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data. | 0 | 0.34 | 2019 |
| GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient. | 1 | 0.37 | 2019 |
| A binning tool to reconstruct viral haplotypes from assembled contigs. | 0 | 0.34 | 2019 |
| De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding. | 1 | 0.35 | 2018 |
| A sensitive short read homology search tool for paired-end read sequencing data. | 0 | 0.34 | 2017 |
| Improve homology search sensitivity of PacBio data by correcting frameshifts. | 0 | 0.34 | 2016 |
| Assemble CRISPRs from metagenomic sequencing data. | 0 | 0.34 | 2016 |
| LncRNA-ID: Long non-coding RNA IDentification using balanced random forests. | 6 | 0.52 | 2015 |
| Reconstructing 16S rRNA genes in metagenomic data | 7 | 0.54 | 2015 |
| miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data. | 7 | 0.60 | 2014 |
| A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data. | 5 | 0.47 | 2014 |
| Ribosomal Database Project: Data And Tools For High Throughput Rrna Analysis | 35 | 1.82 | 2014 |
| A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads. | 5 | 0.45 | 2013 |
| ChainKnot: a comparative H-type pseudoknot prediction tool using multiple ab initio folding tools | 0 | 0.34 | 2013 |
| glu-RNA: aliGn highLy strUctured ncRNAs using only sequence similarity | 0 | 0.34 | 2013 |
| Efficient known ncRNA search including pseudoknots. | 5 | 0.34 | 2013 |
| Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM. | 9 | 0.39 | 2013 |
| Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithm. | 1 | 0.36 | 2013 |
| PseudoDomain: identification of processed pseudogenes based on protein domain classification | 0 | 0.34 | 2012 |
| MetaDomain: a profile HMM-based protein domain classification tool for short sequences. | 2 | 0.39 | 2012 |
| Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy. | 9 | 0.41 | 2012 |
| Designing filters for fast-known NcRNA identification. | 2 | 0.40 | 2012 |
| NcRNA homology search using Hamming distance seeds | 1 | 0.35 | 2011 |
| ncRNA consensus secondary structure derivation using grammar strings. | 3 | 0.38 | 2011 |
| HMM-FRAME: accurate protein domain classification for metagenomic sequences in the presence of frameshift errors | 0 | 0.34 | 2011 |
| BLAST Tree: Fast Filtering for Genomic Sequence Classification | 0 | 0.34 | 2010 |
| Designing Patterns and Profiles for Faster HMM Search | 5 | 0.43 | 2009 |
| Designing patterns for profile HMM search. | 9 | 0.98 | 2007 |
| Choosing the best heuristic for seeded alignment of DNA sequences. | 32 | 0.62 | 2006 |
| Designing seeds for similarity search in genomic DNA | 74 | 4.91 | 2005 |
