| Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters. | 0 | 0.34 | 2018 |
| Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle. | 0 | 0.34 | 2017 |
| Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression. | 2 | 0.44 | 2017 |
| Mapping dynamical states to structural classes for Boolean networks using a classification algorithm | 0 | 0.34 | 2015 |
| Biocellion: accelerating computer simulation of multicellular biological system models. | 13 | 0.95 | 2014 |
| Fastbreak: a tool for analysis and visualization of structural variations in genomic data. | 1 | 0.40 | 2012 |
| Trade-off between Responsiveness and Noise Suppression in Biomolecular System Responses to Environmental Cues. | 0 | 0.34 | 2011 |
| EPEPT: A web service for enhanced P-value estimation in permutation tests. | 8 | 0.34 | 2011 |
| Probabilistic analysis of gene expression measurements from heterogeneous tissues. | 18 | 1.42 | 2010 |
| Introduction to the special issue on information theory in molecular biology and neuroscience | 7 | 0.61 | 2010 |
| SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments. | 9 | 0.35 | 2010 |
| An integration architecture designed to deal with the issues of biological scope, scale and complexity | 1 | 0.35 | 2010 |
| Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites | 11 | 1.44 | 2010 |
| Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data | 0 | 0.34 | 2010 |
| Biological information as set-based complexity | 6 | 0.79 | 2010 |
| Adaptable data management for systems biology investigations. | 6 | 1.13 | 2009 |
| Critical Boolean networks require minimal intervention rate. | 0 | 0.34 | 2009 |
| Fewer permutations, more accurate P-values | 27 | 1.72 | 2009 |
| Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation. | 7 | 1.01 | 2009 |
| Inference of Boolean networks using sensitivity regularization. | 9 | 0.53 | 2008 |
| Learning the structure of dynamic Bayesian networks from time series and steady state measurements | 13 | 0.99 | 2008 |
| Systems biology driven software design for the research enterprise. | 6 | 0.62 | 2008 |
| Set-based complexity and biological information | 3 | 0.38 | 2008 |
| Simcluster: clustering enumeration gene expression data on the simplex space. | 4 | 0.55 | 2007 |
| Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data. | 28 | 0.98 | 2007 |
| ProbCD: enrichment analysis accounting for categorization uncertainty | 10 | 0.88 | 2007 |
| Extraction Of The Number Of Peroxisomes In Yeast Cells By Automated Image Analysis | 0 | 0.34 | 2006 |
| Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks. | 43 | 2.51 | 2006 |
| The Role of Redundancy in the Robustness of Random Boolean Networks | 15 | 1.44 | 2005 |
| In silico microdissection of microarray data from heterogeneous cell populations. | 38 | 1.67 | 2005 |
| Robust quantification of in vitro angiogenesis through image analysis | 15 | 1.34 | 2005 |
| Steady-state probabilities for attractors in probabilistic boolean networks | 47 | 3.26 | 2005 |
| Robust estimation of protein expression ratios with lysate microarray technology. | 6 | 1.64 | 2005 |
| Noise In A Small Genetic Circuit That Undergoes Bifurcation | 5 | 2.56 | 2005 |
| Genomic signal processing: the salient issues | 8 | 0.94 | 2004 |
| Correction of misclassifications using a proximity-based estimation method | 0 | 0.34 | 2004 |
| Growing genetic regulatory networks from seed genes | 31 | 1.65 | 2004 |
| On Learning Gene Regulatory Networks Under the Boolean Network Model | 93 | 4.54 | 2003 |
| Genomic signal processing | 8 | 0.73 | 2003 |
| Mappings between probabilistic boolean networks | 9 | 0.71 | 2003 |
| Stability-based cluster analysis applied to microarray data. | 7 | 1.06 | 2003 |
| Markov Random Field Modeling in Median Pyramidal Transform Domain for Denoising Applications | 0 | 0.34 | 2002 |
| ayesian automatic relevance determination algorithms for classifying gene expression data | 0 | 0.34 | 2002 |
| Kernel density estimation with adaptive varying window size | 14 | 0.83 | 2002 |
| Binary analysis and optimization-based normalization of gene expression data. | 60 | 4.67 | 2002 |
| Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks. | 516 | 42.92 | 2002 |
| Almost all monotone Boolean functions are polynomially learnable using membership queries | 9 | 0.76 | 2001 |
| Block-median pyramidal transform: analysis and denoising applications | 7 | 0.85 | 2001 |
| Breakdown probabilities of recursive stack filters | 2 | 0.40 | 2001 |
| Perceptual Issues in Music Pattern Recognition: Complexity of Rhythm and Key Finding | 18 | 1.25 | 2001 |
