| SPRISS: approximating frequent k-mers by sampling reads, and applications | 0 | 0.34 | 2022 |
| K2Mem: Discovering Discriminative K-mers From Sequencing Data for Metagenomic Reads Classification | 0 | 0.34 | 2022 |
| Fast alignment of reads to a variation graph with application to SNP detection | 0 | 0.34 | 2021 |
| Comparison Of Microbiome Samples: Methods And Computational Challenges | 0 | 0.34 | 2021 |
| Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing | 0 | 0.34 | 2020 |
| Improving Metagenomic Classification using Discriminative k-mers from Sequencing Data | 0 | 0.34 | 2020 |
| Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing. | 0 | 0.34 | 2019 |
| Indexing k-mers in Linear-space for Quality Value Compression | 0 | 0.34 | 2019 |
| Indexing k -mers in linear space for quality value compression. | 0 | 0.34 | 2019 |
| MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage. | 0 | 0.34 | 2019 |
| Better quality score compression through sequence-based quality smoothing. | 0 | 0.34 | 2019 |
| FSH: fast spaced seed hashing exploiting adjacent hashes. | 1 | 0.35 | 2018 |
| Fast and Sensitive Classification of Short Metagenomic Reads with SKraken | 1 | 0.38 | 2017 |
| Skraken: Fast And Sensitive Classification Of Short Metagenomic Reads Based On Filtering Uninformative K-Mers | 1 | 0.36 | 2017 |
| Fast Spaced Seed Hashing. | 1 | 0.35 | 2017 |
| Metagenomic reads binning with spaced seeds. | 2 | 0.37 | 2017 |
| On the comparison of regulatory sequences with multiple resolution Entropic Profiles. | 2 | 0.40 | 2016 |
| MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures. | 5 | 0.44 | 2016 |
| Higher recall in metagenomic sequence classification exploiting Overlapping Reads. | 1 | 0.36 | 2016 |
| Fast Alignment-free Comparison for Regulatory Sequences using Multiple Resolution Entropic Profiles. | 2 | 0.37 | 2015 |
| Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison | 7 | 0.47 | 2014 |
| QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering. | 2 | 0.36 | 2014 |
| Parallel continuous flow: a parallel suffix tree construction tool for whole genomes. | 0 | 0.34 | 2014 |
| Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns. | 7 | 0.47 | 2014 |
| Pattern Recognition in Bioinformatics: 9th IAPR International Conference, PRIB 2014, Stockholm, Sweden, August 21-23, 2014. Proceedings | 0 | 0.34 | 2014 |
| Reducing the Space of Degenerate Patterns in Protein Remote Homology Detection | 0 | 0.34 | 2013 |
| Efficient parallel construction of suffix trees for genomes larger than main memory | 4 | 0.40 | 2013 |
| Ultrametric networks: a new tool for phylogenetic analysis. | 3 | 0.49 | 2013 |
| Fast computation of entropic profiles for the detection of conservation in genomes | 7 | 0.50 | 2013 |
| Filtering Degenerate Patterns With Application To Protein Sequence Analysis | 3 | 0.42 | 2013 |
| Alignment-free phylogeny of whole genomes using underlying subwords. | 19 | 0.76 | 2012 |
| Whole-Genome Phylogeny by Virtue of Unic Subwords | 9 | 0.48 | 2012 |
| The irredundant class method for remote homology detection of protein sequences. | 15 | 0.61 | 2011 |
| VARUN: discovering extensible motifs under saturation constraints. | 17 | 0.66 | 2010 |
| Classification of protein sequences by means of irredundant patterns. | 10 | 0.55 | 2010 |
| Remote Homology Detection of Protein Sequences. | 0 | 0.34 | 2010 |
| Binding balls: fast detection of binding sites using a property of spherical Fourier transform. | 2 | 0.39 | 2009 |
| Mining overrepresented 3D patterns of secondary structures in proteins. | 1 | 0.37 | 2008 |
| Detection of subtle variations as consensus motifs | 7 | 0.46 | 2008 |
| Subtle motif discovery for detection of DNA regulatory sites | 3 | 0.41 | 2007 |
| Application re-strusturing and data management on a GRID enviroment: a case study for bioinformatics | 0 | 0.34 | 2006 |
| Mining, compressing and classifying with extensible motifs. | 16 | 0.76 | 2006 |
| Off-Line Compression by Extensible Motifs | 0 | 0.34 | 2005 |
| Conservative extraction of over-represented extensible motifs. | 14 | 0.71 | 2005 |
| Motifs in Ziv-Lempel-Welch Clef | 11 | 0.80 | 2004 |
| Modelling a protein structure comparison application on the grid using PROTEUS | 2 | 0.38 | 2004 |
| PROuST: a comparison method of three-dimensional structures of proteins using indexing techniques. | 14 | 0.95 | 2004 |
| Grid Deployment Of Bioinformatics Applications: A Case Study In Protein Similarity Determination | 2 | 0.41 | 2004 |
