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KIYOSHI ASAI
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Name
Affiliation
Papers
KIYOSHI ASAI
Natl Inst Adv Ind Sci & Technol, Computat Biol Res Ctr, Koto Ku, Tokyo 1350064, Japan
74
Collaborators
Citations
PageRank
111
846
79.20
Referers
Referees
References
1829
1073
779
Search Limit
100
1000
Publications (74 rows)
Collaborators (100 rows)
Referers (100 rows)
Referees (100 rows)
Title
Citations
PageRank
Year
Pbsim2: A Simulator For Long-Read Sequencers With A Novel Generative Model Of Quality Scores
0
0.34
2021
Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy model.
0
0.34
2020
RintC: fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp.
0
0.34
2020
Estimating energy parameters for RNA secondary structure predictions using both experimental and computational data.
0
0.34
2019
Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities.
1
0.39
2018
Secure Division Protocol and Applications to Privacy-preserving Chi-squared Tests
0
0.34
2018
Combining probabilistic alignments with read pair information improves accuracy of split-alignments.
0
0.34
2018
Training alignment parameters for arbitrary sequencers with LAST-TRAIN.
1
0.37
2017
Evolutionary design of multiple genes encoding the same protein.
2
0.39
2017
CDSfold: an algorithm for designing a protein-coding sequence with the most stable secondary structure.
1
0.35
2016
Rtools: a web server for various secondary structural analyses on single RNA sequences.
0
0.34
2016
Comprehensive prediction of lncRNA-RNA interactions in human transcriptome.
3
0.39
2016
Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens.
0
0.34
2015
Guest Editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014).
0
0.34
2015
Tertiary Structure Prediction of RNA-RNA Complexes Using a Secondary Structure and Fragment-Based Method.
0
0.34
2014
Reference-free prediction of rearrangement breakpoint reads.
1
0.37
2014
PBSIM: PacBio reads simulator--toward accurate genome assembly.
44
2.04
2013
Generalized Centroid Estimators In Bioinformatics
7
0.44
2013
Analysis of base-pairing probabilities of RNA molecules involved in protein-RNA interactions.
1
0.34
2013
DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.
11
0.56
2012
Rchange: algorithms for computing energy changes of RNA secondary structures in response to base mutations.
2
0.39
2012
A classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA).
7
0.60
2012
Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming.
1
0.41
2012
RecountDB: a database of mapped and count corrected transcribed sequences.
0
0.34
2012
Transformations for the compression of FASTQ quality scores of next-generation sequencing data.
29
1.62
2012
Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection.
5
0.63
2011
Improving The Accuracy Of Predicting Secondary Structure For Aligned Rna Sequences
12
0.53
2011
CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences.
5
0.41
2011
A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.
9
0.55
2011
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.
33
1.32
2011
A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures
3
0.38
2010
RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.
29
0.97
2010
In search of true reads: A classification approach to next generation sequencing data selection
0
0.34
2010
Conic Programming for Multitask Learning
4
0.38
2010
Prediction of RNA secondary structure by maximizing pseudo-expected accuracy.
17
0.56
2010
A local multiple alignment method for detection of non-coding RNA sequences.
4
0.40
2009
Predictions of RNA secondary structure by combining homologous sequence information.
14
0.72
2009
Centroidfold: A Web Server For Rna Secondary Structure Prediction
19
0.81
2009
CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
18
0.66
2009
Prediction of RNA secondary structure using generalized centroid estimators.
50
2.06
2009
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs.
12
1.58
2009
Software.ncrna.org: web servers for analyses of RNA sequences.
1
0.36
2008
Rfold: an exact algorithm for computing local base pairing probabilities.
13
0.85
2008
A fast structural multiple alignment method for long RNA sequences.
25
1.03
2008
Directed acyclic graph kernels for structural RNA analysis.
30
0.48
2008
Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
26
1.35
2007
Frnadb: A Platform For Mining/Annotating Functional Rna Candidates From Non-Coding Rna Sequences
16
1.11
2007
Murlet: a practical multiple alignment tool for structural RNA sequences.
31
1.08
2007
Stem kernels for RNA sequence analyses
0
0.34
2007
Multi-Task Learning via Conic Programming
33
1.52
2007
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