| The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. | 0 | 0.34 | 2019 |
| Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. | 0 | 0.34 | 2018 |
| The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. | 1 | 0.35 | 2018 |
| BioModels: expanding horizons to include more modelling approaches and formats. | 3 | 0.38 | 2018 |
| Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. | 0 | 0.34 | 2018 |
| Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). | 0 | 0.34 | 2018 |
| SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks. | 1 | 0.36 | 2017 |
| A brief history of combine | 0 | 0.34 | 2017 |
| The systems biology format converter. | 6 | 0.40 | 2016 |
| BioModels: ten-year anniversary. | 28 | 1.09 | 2015 |
| JSBML 1.0: providing a smorgasbord of options to encode systems biology models | 6 | 0.51 | 2015 |
| Modulation of calmodulin lobes by different targets: an allosteric model with hemiconcerted conformational transitions. | 2 | 0.45 | 2015 |
| SPARQL-enabled identifier conversion with Identifiers.org. | 4 | 0.40 | 2015 |
| BioModels linked dataset. | 8 | 0.52 | 2014 |
| COMBINE archive: One File To Share Them All. | 1 | 0.39 | 2014 |
| COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. | 21 | 1.15 | 2014 |
| The EBI RDF platform: linked open data for the life sciences. | 74 | 3.11 | 2014 |
| Structure, function, and behaviour of computational models in systems biology. | 11 | 0.52 | 2013 |
| Towards the collaborative curation of the registry underlying Identifiers.org. | 2 | 0.37 | 2013 |
| The systems biology simulation core algorithm. | 8 | 0.45 | 2013 |
| Path2Models: large-scale generation of computational models from biochemical pathway maps. | 27 | 0.77 | 2013 |
| SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations. | 3 | 0.50 | 2013 |
| SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. | 29 | 1.04 | 2013 |
| Cooperative Binding. | 0 | 0.34 | 2013 |
| Qualitative translation of relations from BioPAX to SBML qual. | 8 | 0.57 | 2012 |
| Identifiers.Org And Miriam Registry: Community Resources To Provide Persistent Identification | 65 | 3.11 | 2012 |
| Software support for SBGN maps: SBGN-ML and LibSBGN. | 21 | 1.22 | 2012 |
| Considerations of graph-based concepts to manage of computational biology models and associated simulations. | 0 | 0.34 | 2012 |
| Delivering 'Cool URIs' That Do Not Change. | 0 | 0.34 | 2012 |
| Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies. | 1 | 0.36 | 2012 |
| MELTING, a flexible platform to predict the melting temperatures of nucleic acids. | 5 | 0.44 | 2012 |
| Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. | 2 | 0.37 | 2012 |
| Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language. | 77 | 2.43 | 2011 |
| Minimum Information About A Simulation Experiment (Miase) | 33 | 1.27 | 2011 |
| JSBML: a flexible Java library for working with SBML. | 37 | 1.71 | 2011 |
| BioModels.net Web Services, a free and integrated toolkit for computational modelling software. | 12 | 1.03 | 2010 |
| Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP. | 13 | 0.41 | 2010 |
| Ranked retrieval of Computational Biology models. | 22 | 0.61 | 2010 |
| BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. | 167 | 8.84 | 2010 |
| Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes. | 23 | 0.75 | 2010 |
| Computing phenomenologic Adair-Klotz constants from microscopic MWC parameters | 3 | 0.51 | 2009 |
| The long journey to a Systems Biology of neuronal function. | 5 | 0.64 | 2007 |
| SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML). | 29 | 1.50 | 2007 |
| MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology. | 43 | 3.23 | 2007 |
| BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. | 217 | 21.22 | 2006 |
| Darpp-32 Is A Robust Integrator Of Dopamine And Glutamate Signals | 1 | 0.49 | 2006 |
| CellML2SBML: conversion of CellML into SBML | 8 | 0.57 | 2006 |
| LGICdb: a manually curated sequence database after the genomes. | 5 | 0.91 | 2006 |
| The Molecular Pages of the mesotelencephalic dopamine consortium (DopaNet) | 2 | 0.58 | 2004 |
| MELTING, computing the melting temperature of nucleic acid duplex. | 27 | 4.61 | 2001 |
