| Multi-Faceted Semantic Clustering With Text-Derived Phenotypes* | 0 | 0.34 | 2021 |
| Towards Similarity-Based Differential Diagnostics For Common Diseases | 0 | 0.34 | 2021 |
| Deepgoplus: Improved Protein Function Prediction From Sequence (Vol 36, Pg 422, 2020) | 1 | 0.35 | 2021 |
| Deepviral: Prediction Of Novel Virus-Host Interactions From Protein Sequences And Infectious Disease Phenotypes | 0 | 0.34 | 2021 |
| Improved Characterisation Of Clinical Text Through Ontology-Based Vocabulary Expansion | 0 | 0.34 | 2021 |
| A Fast, Accurate, And Generalisable Heuristic-Based Negation Detection Algorithm For Clinical Text | 0 | 0.34 | 2021 |
| Predicting candidate genes from phenotypes, functions, and anatomical site of expression | 0 | 0.34 | 2021 |
| Semantic similarity and machine learning with ontologies | 2 | 0.39 | 2021 |
| Deepgoweb: Fast And Accurate Protein Function Prediction On The (Semantic) Web | 0 | 0.34 | 2021 |
| DTI-Voodoo: machine learning over interaction networks and ontology-based background knowledge predicts drug-target interactions | 0 | 0.34 | 2021 |
| DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier. | 0 | 0.34 | 2020 |
| DeepGOPlus: improved protein function prediction from sequence. | 4 | 0.40 | 2020 |
| Towards Semantic Interoperability: Finding And Repairing Hidden Contradictions In Biomedical Ontologies | 0 | 0.34 | 2020 |
| Combining lexical and context features for automatic ontology extension. | 0 | 0.34 | 2020 |
| Semi-Supervised Entity Alignment via Knowledge Graph Embedding with Awareness of Degree Difference | 7 | 0.46 | 2019 |
| EL Embeddings: Geometric construction of models for the Description Logic EL ++. | 0 | 0.34 | 2019 |
| Ontology based text mining of gene-phenotype associations: application to candidate gene prediction. | 0 | 0.34 | 2019 |
| Inferring ontology graph structures using OWL reasoning. | 3 | 0.40 | 2018 |
| Ontology-based validation and identification of regulatory phenotypes. | 0 | 0.34 | 2018 |
| The anatomy of phenotype ontologies: principles, properties and applications. | 5 | 0.46 | 2018 |
| Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes. | 3 | 0.37 | 2018 |
| DeepGO: Predicting protein functions from sequence and interactions using a deep ontology-aware classifier. | 21 | 0.77 | 2018 |
| OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction. | 2 | 0.35 | 2018 |
| Notions of similarity for systems biology models. | 1 | 0.39 | 2018 |
| Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations. | 5 | 0.41 | 2018 |
| Vec2SPARQL - integrating SPARQL queries and knowledge graph embeddings. | 0 | 0.34 | 2018 |
| Usage of cell nomenclature in biomedical literature. | 0 | 0.34 | 2017 |
| Integrating phenotype ontologies with PhenomeNET. | 7 | 0.46 | 2017 |
| Semantic prioritization of novel causative genomic variants. | 7 | 0.51 | 2017 |
| Evaluating the effect of annotation size on measures of semantic similarity. | 4 | 0.44 | 2017 |
| Neuro-symbolic representation learning on biological knowledge graphs. | 5 | 0.40 | 2017 |
| Data science and symbolic AI: Synergies, challenges and opportunities | 1 | 0.35 | 2017 |
| DESM: portal for microbial knowledge exploration systems. | 0 | 0.34 | 2016 |
| DermO; an ontology for the description of dermatologic disease. | 0 | 0.34 | 2016 |
| Large-Scale Reasoning over Functions in Biomedical Ontologies. | 0 | 0.34 | 2016 |
| Updates to the AberOWL Ontology Repository. | 0 | 0.34 | 2016 |
| Integrating phenotype ontologies with PhenomeNET. | 0 | 0.34 | 2016 |
| The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. | 1 | 0.34 | 2016 |
| Using AberOWL for fast and scalable reasoning over BioPortal ontologies | 3 | 0.39 | 2016 |
| To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). | 0 | 0.34 | 2016 |
| FALDO: A semantic standard for describing the location of nucleotide and protein feature annotation. | 2 | 0.39 | 2016 |
| SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL. | 0 | 0.34 | 2016 |
| FoodON: A Global Farm-to-Fork Food Ontology. | 0 | 0.34 | 2016 |
| FLOPO - An Ontology for the Integration of Trait Data from Digitized Floras and Plant Image Collections. | 0 | 0.34 | 2016 |
| Similarity-based search of model organism, disease and drug effect phenotypes. | 1 | 0.35 | 2015 |
| Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. | 0 | 0.34 | 2015 |
| Visualising Ontologies with AberOWL. | 1 | 0.35 | 2015 |
| The role of ontologies in biological and biomedical research: a functional perspective. | 28 | 0.95 | 2015 |
| AberOWL: an ontology portal with OWL EL reasoning. | 0 | 0.34 | 2015 |
| Thematic series on biomedical ontologies in JBMS: challenges and new directions. | 4 | 0.39 | 2014 |
