| The locality dilemma of Sankoff-like RNA alignments. | 0 | 0.34 | 2020 |
| Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target Prediction | 0 | 0.34 | 2019 |
| IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction. | 0 | 0.34 | 2019 |
| Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs. | 0 | 0.34 | 2019 |
| Knotty: efficient and accurate prediction of complex RNA pseudoknot structures. | 2 | 0.37 | 2018 |
| Freiburg RNA tools: a central online resource for RNA-focused research and teaching. | 3 | 0.42 | 2018 |
| Fixed-Parameter Tractable Sampling for RNA Design with Multiple Target Structures. | 0 | 0.34 | 2018 |
| Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice. | 0 | 0.34 | 2017 |
| Design of Artificial Riboswitches as Biosensors. | 0 | 0.34 | 2017 |
| The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. | 1 | 0.37 | 2017 |
| Tractable RNA-ligand interaction kinetics. | 1 | 0.36 | 2017 |
| Sparse RNA folding revisited: space-efficient minimum free energy structure prediction. | 1 | 0.36 | 2016 |
| Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction | 0 | 0.34 | 2015 |
| ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs. | 10 | 0.44 | 2014 |
| Local Exact Pattern Matching for Non-FixedRNA Structures. | 0 | 0.34 | 2014 |
| SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics. | 12 | 0.52 | 2013 |
| Exact pattern matching for RNA structure ensembles | 4 | 0.40 | 2012 |
| Local exact pattern matching for non-fixed RNA structures | 1 | 0.36 | 2012 |
| Alignnment of RNA with Structures of Unlimited Complexity. | 0 | 0.34 | 2010 |
| Time and space efficient RNA-RNA interaction prediction via sparse folding | 18 | 0.77 | 2010 |
| Sparsification of RNA structure prediction including pseudoknots | 11 | 0.60 | 2010 |
| A propagator for maximum weight string alignment with arbitrary pairwise dependencies | 1 | 0.38 | 2010 |
| Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots | 10 | 0.53 | 2008 |
