| Rnacentral 2021: Secondary Structure Integration, Improved Sequence Search And New Member Databases | 0 | 0.34 | 2021 |
| RNAcentral: a hub of information for non-coding RNA sequences. | 2 | 0.35 | 2019 |
| Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles. | 0 | 0.34 | 2019 |
| TISSUES 2.0: an integrative web resource on mammalian tissue expression. | 1 | 0.38 | 2018 |
| CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment | 0 | 0.34 | 2017 |
| RAIN: RNA-protein Association and Interaction Networks. | 22 | 1.09 | 2017 |
| RNAscClust: clustering RNA sequences using structure conservation and graph based motifs. | 3 | 0.42 | 2017 |
| Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment. | 3 | 0.41 | 2016 |
| Searching for SNPs disrupting RNA secondary structures. | 0 | 0.34 | 2014 |
| Protein-driven inference of miRNA-disease associations. | 17 | 0.97 | 2014 |
| The Rnasnp Web Server: Predicting Snp Effects On Local Rna Secondary Structure | 3 | 0.40 | 2013 |
| RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model. | 8 | 0.49 | 2012 |
| RILogo: visualizing RNA-RNA interactions. | 1 | 0.35 | 2012 |
| deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns. | 5 | 0.48 | 2012 |
| Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs. | 5 | 0.51 | 2012 |
| From Structure Prediction To Genomic Screens For Novel Non-Coding Rnas | 4 | 0.41 | 2011 |
| Fast local fragment chaining using sum-of-pair gap costs. | 1 | 0.35 | 2011 |
| The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. | 2 | 0.38 | 2011 |
| PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences. | 16 | 0.67 | 2011 |
| maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences. | 1 | 0.37 | 2011 |
| Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions. | 5 | 0.48 | 2010 |
| Structural profiles of human miRNA families from pairwise clustering. | 13 | 0.76 | 2009 |
| Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search | 1 | 0.36 | 2009 |
| SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. | 3 | 0.43 | 2007 |
| Fast Pairwise Structural Rna Alignments By Pruning Of The Dynamical Programming Matrix | 46 | 1.72 | 2007 |
| Multiple structural alignment and clustering of RNA sequences. | 63 | 2.05 | 2007 |
| The Tmrdb And Srpdb Resources | 14 | 1.05 | 2006 |
| Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% | 61 | 3.17 | 2005 |
| The Foldalign Web Server For Pairwise Structural Rna Alignment And Mutual Motif Search | 20 | 1.14 | 2005 |
| Srpdb: Signal Recognition Particle Database | 18 | 5.19 | 2003 |
| tmRDB (tmRNA database) | 7 | 1.59 | 2003 |
| Recognition of environmental and genetic effects on barley phenolic fingerprints by neural networks. | 0 | 0.34 | 2001 |
| Semi-automated update and cleanup of structural RNA alignment databases. | 6 | 2.18 | 2001 |
| tmRDB (tmRNA database). | 7 | 0.71 | 2001 |
| Srpdb (Signal Recognition Particle Database) | 13 | 3.36 | 2000 |
| MatrixPlot: visualizing sequence constraints. | 12 | 1.90 | 1999 |
| Using sequence motifs for enhanced neural network prediction of protein distance constraints. | 8 | 3.57 | 1999 |
| Finding common sequence and structure motifs in a set of RNA sequences. | 15 | 4.81 | 1997 |
| Universal distribution of saliencies for pruning in layered neural networks. | 7 | 1.75 | 1997 |
| Displaying the information contents of structural RNA alignments: the structure logos. | 21 | 4.51 | 1997 |
| A quantitative study of pruning by optimal brain damage. | 14 | 2.64 | 1993 |
