| MICOP: Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics data. | 0 | 0.34 | 2018 |
| BriCA: A Modular Software Platform for Whole Brain Architecture. | 1 | 0.37 | 2016 |
| A Generic Software Platform for Brain-inspired Cognitive Computing. | 4 | 0.89 | 2015 |
| Particle Simulation of Oxidation Induced Band 3 Clustering in Human Erythrocytes. | 0 | 0.34 | 2015 |
| Contribution of developmental changes in energy metabolism to excitation-contraction coupling of a ventricular cell: A simulation study | 0 | 0.34 | 2014 |
| GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses. | 1 | 0.37 | 2013 |
| Mmmdb: Mouse Multiple Tissue Metabolome Database | 1 | 0.35 | 2012 |
| Prediction of axillary lymph node metastasis in primary breast cancer patients using a decision tree-based model. | 7 | 0.59 | 2012 |
| KBWS: an EMBOSS associated package for accessing bioinformatics web services. | 1 | 0.38 | 2011 |
| Integrative Features Of The Yeast Phosphoproteome And Protein-Protein Interaction Map | 7 | 0.65 | 2011 |
| Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions. | 11 | 0.57 | 2010 |
| G-language genome analysis environment with REST and SOAP web service interfaces. | 3 | 0.43 | 2010 |
| emPAI Calc--for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry. | 2 | 0.66 | 2010 |
| Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data. | 12 | 0.50 | 2010 |
| Measure of synonymous codon usage diversity among genes in bacteria. | 3 | 0.40 | 2009 |
| A web server for interactive and zoomable Chaos Game Representation images. | 2 | 0.42 | 2009 |
| Can complex cellular processes be governed by simple linear rules? | 0 | 0.34 | 2009 |
| Genome Projector: zoomable genome map with multiple views. | 16 | 0.94 | 2009 |
| Network features and pathway analyses of a signal transduction cascade. | 2 | 0.39 | 2009 |
| GeNESiS: gene network evolution simulation software. | 29 | 0.47 | 2008 |
| Construction of a biological tissue model based on a single-cell model: a computer simulation of metabolic heterogeneity in the liver lobule. | 4 | 0.76 | 2008 |
| Time-resolved metabolomics reveals metabolic modulation in rice foliage. | 5 | 0.41 | 2008 |
| Comparative study of circadian oscillatory network models of Drosophila. | 0 | 0.34 | 2008 |
| Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments. | 0 | 0.34 | 2008 |
| Comparison of metabolite production capability indices generated by network analysis methods. | 0 | 0.34 | 2008 |
| Robust effects of Tsr-CheBp and CheA-CheYp affinity in bacterial chemotaxis. | 1 | 0.39 | 2007 |
| Visualization of three-way comparisons of omics data. | 0 | 0.34 | 2007 |
| eXpanda: An Integrated Platform for Network Analysis and Visualization. | 4 | 0.53 | 2007 |
| Inferring rules of Escherichia coli translational efficiency using an artificial neural network. | 1 | 0.43 | 2007 |
| Restauro-G: a rapid genome re-annotation system for comparative genomics. | 1 | 0.38 | 2007 |
| Variation in the correlation of G + C composition with synonymous codon usage bias among bacteria. | 1 | 0.41 | 2007 |
| Consideration On Contact Mechanism Of Ybacuo Bulk Superconductor With Deposited Metal Layer | 0 | 0.34 | 2007 |
| SPLITS: A New Program for Predicting Split and Intron-Containing tRNA Genes at the Genome Level. | 2 | 0.47 | 2006 |
| GPAC: Benchmarking the Sensitivity of Genome Informatics Analysis to Genome Annotation Completeness. | 1 | 0.36 | 2006 |
| Parameter estimation for stiff equations of biosystems using radial basis function networks. | 28 | 0.76 | 2006 |
| MathDAMP: a package for differential analysis of metabolite profiles. | 33 | 1.48 | 2006 |
| HybGFS: a hybrid method for genome-fingerprint scanning. | 0 | 0.34 | 2006 |
| Multiresolution analysis uncovers hidden conservation of properties in structurally and functionally similar proteins. | 0 | 0.34 | 2006 |
| MEGU: Pathway Mapping Web-Service Based on KEGG and SVG. | 5 | 1.01 | 2006 |
| GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes. | 25 | 0.59 | 2006 |
| An interaction knowledgebase for biomolecular modeling | 0 | 0.34 | 2006 |
| KEGG-Based Pathway Visualization Tool for Complex Omics Data. | 12 | 1.28 | 2005 |
| A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks. | 26 | 0.47 | 2005 |
| Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa). | 1 | 0.44 | 2005 |
| A multi-algorithm, multi-timescale method for cell simulation. | 53 | 8.14 | 2004 |
| Characterization of the splice sites in GT-AG and GC-AG introns in higher eukaryotes using full-length cDNAs. | 3 | 0.50 | 2004 |
| Distributed cell biology simulations with e-cell system | 4 | 0.47 | 2004 |
| A general computational model of mitochondrial metabolism in a whole organelle scale. | 4 | 0.96 | 2004 |
| E-Cell 2: multi-platform E-Cell simulation system. | 30 | 2.69 | 2003 |
| G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining. | 19 | 1.46 | 2003 |
