| MetaCache-GPU - Ultra-Fast Metagenomic Classification. | 0 | 0.34 | 2021 |
| cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-Enabled GPUs | 0 | 0.34 | 2020 |
| Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures | 0 | 0.34 | 2019 |
| XLCS - A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters. | 0 | 0.34 | 2019 |
| LightSpMV: Faster CUDA-Compatible Sparse Matrix-Vector Multiplication Using Compressed Sparse Rows. | 1 | 0.35 | 2018 |
| parSRA: A framework for the parallel execution of short read aligners on compute clusters. | 1 | 0.39 | 2018 |
| MetaCache: Context-aware classification of metagenomic reads using minhashing. | 4 | 0.54 | 2017 |
| CLOVE: classification of genomic fusions into structural variation events. | 0 | 0.34 | 2017 |
| PUNAS: A Parallel Ungapped-Alignment-Featured Seed Verification Algorithm for Next-Generation Sequencing Read Alignment | 1 | 0.35 | 2017 |
| SWhybrid: A Hybrid-Parallel Framework for Large-Scale Protein Sequence Database Search | 3 | 0.40 | 2017 |
| S-Aligner: Ultrascalable Read Mapping on Sunway Taihu Light. | 0 | 0.34 | 2017 |
| Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs. | 2 | 0.40 | 2017 |
| rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs. | 1 | 0.35 | 2016 |
| Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures | 7 | 0.58 | 2016 |
| Bit-parallel approximate pattern matching: Kepler GPU versus Xeon Phi | 2 | 0.37 | 2016 |
| ParDRe: Faster Parallel Duplicated Reads Removal Tool for Sequencing Studies. | 3 | 0.42 | 2016 |
| Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS | 0 | 0.34 | 2016 |
| SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations. | 0 | 0.34 | 2016 |
| MSAProbs-MPI: Parallel Multiple Sequence Aligner for Distributed-Memory Systems. | 0 | 0.34 | 2016 |
| CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm | 1 | 0.38 | 2016 |
| Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs. | 0 | 0.34 | 2016 |
| Parallel and Space-efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data | 4 | 0.40 | 2016 |
| Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters. | 7 | 0.44 | 2016 |
| Scalable Clustering by Iterative Partitioning and Point Attractor Representation. | 7 | 0.43 | 2016 |
| Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model | 6 | 0.54 | 2015 |
| SNVSniffer: An integrated caller for germline and somatic SNVs based on Bayesian models | 0 | 0.34 | 2015 |
| High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs | 7 | 0.50 | 2015 |
| Accelerating large-scale biological database search on Xeon Phi-based neo-heterogeneous architectures | 5 | 0.44 | 2015 |
| GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences | 13 | 0.65 | 2015 |
| Accelerating Bioinformatics Applications via Emerging Parallel Computing Systems. | 0 | 0.34 | 2015 |
| Efficient and Accurate OTU Clustering with GPU-based Sequence Alignment and Dynamic Dendrogram Cutting | 1 | 0.36 | 2015 |
| Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems | 9 | 0.66 | 2015 |
| LightSpMV: Faster CSR-based sparse matrix-vector multiplication on CUDA-enabled GPUs | 13 | 0.60 | 2015 |
| SWAPHI-LS: Smith-Waterman Algorithm on Xeon Phi coprocessors for Long DNA Sequences | 22 | 0.87 | 2014 |
| FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. | 9 | 0.65 | 2014 |
| CUSHAW2-GPU: Empowering Faster Gapped Short-Read Alignment Using GPU Computing | 19 | 0.91 | 2014 |
| GEM: an elastic and translation-invariant similarity measure with automatic trend adjustment. | 0 | 0.34 | 2014 |
| Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS. | 7 | 0.64 | 2014 |
| Fast dendrogram-based OTU clustering using sequence embedding | 1 | 0.36 | 2014 |
| SWAPHI: Smith-waterman protein database search on Xeon Phi coprocessors | 28 | 1.13 | 2014 |
| SparseHC: A Memory-efficient Online Hierarchical Clustering Algorithm. | 6 | 0.46 | 2014 |
| Bit-Parallel Approximate Pattern Matching on the Xeon Phi Coprocessor | 2 | 0.38 | 2014 |
| CUDA-Accelerated Alignment of Subsequences in Streamed Time Series Data | 3 | 0.39 | 2014 |
| UPC++ for bioinformatics: A case study using genome-wide association studies | 7 | 0.53 | 2014 |
| CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions. | 79 | 2.57 | 2013 |
| A hybrid short read mapping accelerator. | 23 | 1.06 | 2013 |
| Reconfigurable Accelerator for the Word-Matching Stage of BLASTN | 7 | 0.46 | 2013 |
| CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform. | 50 | 3.07 | 2012 |
| Accelerating short read mapping on an FPGA (abstract only) | 4 | 0.43 | 2012 |
| Evaluation of GPU-based Seed Generation for Computational Genomics Using Burrows-Wheeler Transform | 2 | 0.39 | 2012 |
