Name
Abstract | ||
|---|---|---|
The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) provides a nucleotide sequence archive database and accompanying database tools for sequence submission, entry retrieval and annotation analysis. The DDBJ collected and released 3 637 446 entries/2 272 231 889 bases between July 2009 and June 2010. A highlight of the released data was archive datasets from next-generation sequencing reads of Japanese rice cultivar, Koshihikari submitted by the National Institute of Agrobiological Sciences. In this period, we started a new archive for quantitative genomics data, the DDBJ Omics aRchive (DOR). The DOR stores quantitative data both from the microarray and high-throughput new sequencing platforms. Moreover, we improved the content of the DDBJ patent sequence, released a new submission tool of the DDBJ Sequence Read Archive (DRA) which archives massive raw sequencing reads, and enhanced a cloud computing-based analytical system from sequencing reads, the DDBJ Read Annotation Pipeline. In this article, we describe these new functions of the DDBJ databases and support tools. |
Year | DOI | Venue |
|---|---|---|
2011 | 10.1093/nar/gkq1041 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
amino acid sequence,genomics | Annotation,Information retrieval,Biology,Genomics,Bioinformatics,Genetics,Molecular Sequence Annotation,Sequence Read Archive | Journal |
Volume | Issue | ISSN |
39 | Database issue | 0305-1048 |
Citations | PageRank | References |
11 | 2.08 | 8 |
Authors | ||
11 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Eli Kaminuma | 1 | 99 | 18.33 |
| Takehide Kosuge | 2 | 44 | 6.70 |
| Yuichi Kodama | 3 | 185 | 22.55 |
| Hideo Aono | 4 | 11 | 2.08 |
| Jun Mashima | 5 | 89 | 16.21 |
| Takashi Gojobori | 6 | 439 | 241.79 |
| Hideaki Sugawara | 7 | 591 | 264.11 |
| Osamu Ogasawara | 8 | 124 | 23.46 |
| Toshihisa Takagi | 9 | 858 | 102.84 |
| Kousaku Okubo | 10 | 182 | 52.06 |
| Yasukazu Nakamura | 11 | 338 | 57.89 |