Title
Autocatalysis in reaction networks.
Abstract
The persistence conjecture is a long-standing open problem in chemical reaction network theory. It concerns the behavior of solutions to coupled ODE systems that arise from applying mass-action kinetics to a network of chemical reactions. The idea is that if all reactions are reversible in a weak sense, then no species can go extinct. A notion that has been found useful in thinking about persistence is that of "critical siphon." We explore the combinatorics of critical siphons, with a view toward the persistence conjecture. We introduce the notions of "drainable" and "self-replicable" (or autocatalytic) siphons. We show that: Every minimal critical siphon is either drainable or self-replicable; reaction networks without drainable siphons are persistent; and nonautocatalytic weakly reversible networks are persistent. Our results clarify that the difficulties in proving the persistence conjecture are essentially due to competition between drainable and self-replicable siphons.
Year
DOI
Venue
2013
10.1007/s11538-014-0024-x
Bulletin of mathematical biology
Keywords
Field
DocType
Critical siphons, Persistence, Reaction network, Autocatalysis, Petri net
Discrete mathematics,Open problem,Chemical reaction network theory,Conjecture,Mathematics,Ode,Autocatalysis
Journal
Volume
Issue
ISSN
76
10
1522-9602
Citations 
PageRank 
References 
0
0.34
12
Authors
2
Name
Order
Citations
PageRank
Abhishek Deshpande100.34
Manoj Gopalkrishnan2144.56