Name
Abstract | ||
|---|---|---|
HIV Protease Database (HIVdb) is a repository for those structures of HIV protease that have never been released or deposited to the Protein Data Bank (PDB). Together with the official PDB data, HIVdb provided a unique source of information in a statistical sense. The database contains 207 structures; 148 taken from PDB, and 59 that are unique entries in HIVdb. Query tools in terms of the creation of ensembles for statistical analysis were designed. We present a new form, location, tools and data form of the HIV Protease Database. The new tools utilize a standard PDB user interface, but provide extra capabilities connected exclusively with this one protein and its ligands. We also present a design strategy for a specific subset or sub-database of the PDB with the aim of pointing out the statistical dimension of the problem related to a single protein structure. We are currently annotating the ligands in order to include their chemical properties. This approach emphasises large scale databases and scalability. |
Year | DOI | Venue |
|---|---|---|
2002 | 10.1109/CSB.2002.1039363 | CSB |
Keywords | Field | DocType |
hiv protease structural database,databases,chemical properties,biochemistry,protein structure,protein data bank,immune system,molecular biophysics,cancer,statistical analysis,scalability,user interface,proteins | Computer science,Protease,Bioinformatics,Protein Data Bank,User interface,Protein Data Bank (RCSB PDB),Database,Statistical analysis,Scalability | Conference |
ISBN | Citations | PageRank |
0-7695-1653-X | 0 | 0.34 |
References | Authors | |
0 | 5 | |
Name | Order | Citations | PageRank |
|---|---|---|---|
| V. Ravichandran | 1 | 0 | 0.34 |
| Jiri Vondrasek | 2 | 27 | 1.81 |
| Gary Gilliland | 3 | 104 | 122.27 |
| T. N. Bhat | 4 | 114 | 126.17 |
| Alexander Wlodawer | 5 | 0 | 0.34 |