Paper Info
Title
AGML Central: web based gel proteomic infrastructure.
Abstract
AGML Central is a web-based open-source public infrastructure for dissemination of two-dimensional Gel Electrophoresis (2-DE) proteomics data in AGML format (Annotated Gel Markup Language). It includes a growing collection of converters from proprietary formats such as those produced by PDQUEST (BioRad), PHORETIX 2-D (Nonlinear Dynamics) and Melanie (GenBio SA). The resulting unifying AGML formatted entry, with or without the raw gel images, is optionally stored in a database for future reference. AGML Central was developed to provide a common platform for data dissemination and development of 2-DE data analysis tools. This resource responds to an increasing use of AGML for 2-DE public source data representation which requires automated tools for conversion from proprietary formats. Conversion and short-term storage is made publicly available, permanent storage requires prior registering. A JAVA applet visualizer was developed to visualize the AGML data with cross-reference links. In order to facilitate automated access a SOAP web service is also included in the AGML Central infrastructure.http://bioinformatics.musc.edu/agmlcentral.
Year
DOI
Venue
2005
10.1093/bioinformatics/bti246
Bioinformatics
Keywords
Field
DocType
gel proteomic infrastructure,proprietary format,agml central infrastructure,agml data,unifying agml formatted entry,agml central,proteomics data,agml format,data dissemination,2-de data analysis tool,2-de public source data,markup language,gel electrophoresis,java applet,data representation,web service,data analysis
Data mining,Computer science,Source data,Dissemination,Web application,Java applet,Markup language,Analysis tools,World Wide Web,SOAP,Bioinformatics,Web service,Database
Journal
Volume
Issue
ISSN
21
9
1367-4803
Citations 
PageRank 
References 
6
0.53
1
Authors
5
Name
Order
Citations
PageRank
Romesh Stanislaus1883.56
Chuming Chen2267.51
Jennifer Franklin360.53
John Arthur4432.11
Jonas S Almeida573142.25