Title
Fast non-negative dimensionality reduction for protein fold recognition
Abstract
In this paper, dimensionality reduction via matrix factorization with nonnegativity constraints is studied. Because of these constraints, it stands apart from other linear dimensionality reduction methods. Here we explore nonnegative matrix factorization in combination with a classifier for protein fold recognition. Since typically matrix factorization is iteratively done, convergence can be slow. To alleviate this problem, a significantly faster (more than 11 times) algorithm is proposed.
Year
DOI
Venue
2005
10.1007/11564096_67
ECML
Keywords
Field
DocType
nonnegativity constraint,linear dimensionality reduction method,matrix factorization,nonnegative matrix factorization,non-negative dimensionality reduction,dimensionality reduction
Convergence (routing),Discrete mathematics,Combinatorics,Dimensionality reduction,Matrix decomposition,Threading (protein sequence),Algorithm,Non-negative matrix factorization,Classifier (linguistics),Mathematics,Constrained optimization
Conference
Volume
ISSN
ISBN
3720
0302-9743
3-540-29243-8
Citations 
PageRank 
References 
2
0.42
7
Authors
3
Name
Order
Citations
PageRank
Oleg Okun130828.56
Helen Priisalu2584.13
Alexessander Alves361.92