Name
Abstract | ||
|---|---|---|
We introduce a parallelized molecular dynamics (MD) simulation adapted for the IBM Blue Gene/L supercomputer. We begin by describing the Parallel MD code. Next we discuss how Parallel MD was tuned for Blue Gene/L. We then show the results for some test targets, related to disease associated proteins, that we have run on Blue Gene/L and the efficiency we have achieved. Finally, we mention some future directions that we envisage undertaking as a continuation of this project. |
Year | Venue | Keywords |
|---|---|---|
2007 | Parallel and Distributed Computing and Networks | parallel md,parallel molecular dynamics simulation,parallel md code,blue gene,l supercomputer,parallelized molecular dynamic,ibm blue gene,test target,future direction |
Field | DocType | Citations |
Program optimization,IBM,Supercomputer,Computer science,Continuation,Parallel computing,Blue gene,Computational science,Molecular dynamics | Conference | 1 |
PageRank | References | Authors |
0.39 | 3 | 5 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Masakazu Sekijima | 1 | 9 | 5.14 |
| Jun Doi | 2 | 24 | 2.87 |
| Tamotsu Noguchi | 3 | 146 | 26.12 |
| Yutaka Akiyama | 4 | 172 | 37.62 |
| Shigenori Shimizu | 5 | 1 | 0.73 |