Name
Abstract | ||
|---|---|---|
The Protein Data Bank in Europe (PDBe) (http://www.ebi.ac.uk/pdbe/) is actively working with its Worldwide Protein Data Bank partners to enhance the quality and consistency of the international archive of bio-macromolecular structure data, the Protein Data Bank (PDB). PDBe also works closely with its collaborators at the European Bioinformatics Institute and the scientific community around the world to enhance its databases and services by adding curated and actively maintained derived data to the existing structural data in the PDB. We have developed a new database infrastructure based on the remediated PDB archive data and a specially designed database for storing information on interactions between proteins and bound molecules. The group has developed new services that allow users to carry out simple textual queries or more complex 3D structure-based queries. The newly designed 'PDBeView Atlas pages' provide an overview of an individual PDB entry in a user-friendly layout and serve as a starting point to further explore the information available in the PDBe database. PDBe's active involvement with the X-ray crystallography, Nuclear Magnetic Resonance spectroscopy and cryoElectron Microscopy communities have resulted in improved tools for structure deposition and analysis. |
Year | DOI | Venue |
|---|---|---|
2012 | 10.1093/nar/gkp916 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
computational biology,internet,amino acid sequence,nuclear magnetic resonance spectroscopy,proteins,structured data,binding sites,protein data bank,cryo electron microscopy,computer graphics,ligands,x ray crystallography,nucleic,protein conformation | Biological classification,Annotation,Biology,Gene ontology,Spectrum analysis,Genetics,Protein Data Bank,Protein Data Bank (RCSB PDB),The Internet | Journal |
Volume | Issue | ISSN |
38 | Database issue | 0305-1048 |
Citations | PageRank | References |
72 | 7.35 | 30 |
Authors | ||
33 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Sameer Velankar | 1 | 318 | 26.34 |
| Younes Alhroub | 2 | 117 | 9.68 |
| Anaëlle Alili | 3 | 72 | 7.35 |
| Christoph Best | 4 | 132 | 15.16 |
| Harry Boutselakis | 5 | 201 | 43.53 |
| Ségolène Caboche | 6 | 99 | 9.55 |
| Matthew J. Conroy | 7 | 131 | 11.38 |
| Jose M. Dana | 8 | 206 | 16.67 |
| Glen van Ginkel | 9 | 202 | 16.17 |
| A Golovin | 10 | 251 | 49.07 |
| Swanand P. Gore | 11 | 156 | 11.87 |
| Aleksandras Gutmanas | 12 | 110 | 11.20 |
| Pauline Haslam | 13 | 117 | 9.68 |
| Miriam Hirshberg | 14 | 119 | 10.62 |
| Melford John | 15 | 151 | 40.73 |
| Ingvar Lagerstedt | 16 | 152 | 12.84 |
| Saqib Mir | 17 | 225 | 19.96 |
| Laurence E. Newman | 18 | 72 | 7.35 |
| Thomas Oldfield | 19 | 263 | 47.86 |
| Christopher J. Penkett | 20 | 82 | 10.02 |
| Jorge Pineda-Castillo | 21 | 74 | 7.95 |
| Luana Rinaldi | 22 | 99 | 8.88 |
| Gaurav Sahni | 23 | 156 | 13.14 |
| Grégoire Sawka | 24 | 72 | 7.35 |
| Sanchayita Sen | 25 | 135 | 11.70 |
| Robert Slowley | 26 | 101 | 9.49 |
| Antonio Suarez-Uruena | 27 | 146 | 15.30 |
| Antonio Suarez-Uruena | 28 | 146 | 15.30 |
| Jawahar Swaminathan | 29 | 153 | 37.00 |
| Martyn F. Symmons | 30 | 72 | 7.35 |
| Wim F. Vranken | 31 | 112 | 19.85 |
| Michael Wainwright | 32 | 72 | 7.35 |
| Gerard J Kleywegt | 33 | 264 | 20.10 |