Paper Info
Title
A Simple Algorithm Implementation for Pattern-Matching with Bounded Gaps in Genomic and Proteomic Sequences, on the Grid EGEE Platform, using an Intuitive User Interface
Abstract
In the last decade an unprecedented development in bioinformatics has been observed. An extremely high number of organisms have been sequenced and included in genomic databases. The huge amount of data produced needs to be stored and processed for further analysis. Scientists, have researched algorithms for finding complicated patterns in DNA sequences, but there is a need for computa- tional power and large storage systems, in order to implement specific algorithms in as many as possible DNA sequences stored in large Databases and save the results produced for future use. Recently, a number of pattern matching algorithms that allowing gaps have been introduced and Grid is an emerging techology that seems to be helpful in this kind of biomedical research. In this paper, we present our effort towards the construction of a user friendly Interface for accessing the Grid EGEE platform. The Interface is a specific one and was built to perform Pattern-Matching with Bounded Gaps in Genomic and Proteomic Sequences. The algorithm and the Interface is tested with small and large DNA and protein sequences as an input, downloaded from a gene and protein repository, NCBI (National Center for Biotechnology Information) and the gathered results produced are presented.
Year
Venue
Keywords
2009
AIAI Workshops
pattern matching,user interface
Field
DocType
Citations 
Data mining,Computer science,SIMPLE algorithm,User Friendly,User interface,Pattern matching,Grid,Bounded function
Conference
0
PageRank 
References 
Authors
0.34
8
3
Name
Order
Citations
PageRank
Konstantinos I. Vegoudakis110.71
Konstantinos G. Margaritis230345.46
Nicos Maglaveras330654.35