Name
Abstract | ||
|---|---|---|
The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the PDB. Each database holds one entry, if possible, for each PDB entry. DSSP holds the secondary structure of the proteins. PDBREPORT holds reports on the structure quality and lists errors. HSSP holds a multiple sequence alignment for all proteins. The PDBFINDER holds easy to parse summaries of the PDB file content, augmented with essentials from the other systems. PDB_REDO holds re-refined, and often improved, copies of all structures solved by X-ray. WHY_NOT summarizes why certain files could not be produced. All these systems are updated weekly. The data sets can be used for the analysis of properties of protein structures in areas ranging from structural genomics, to cancer biology and protein design. |
Year | DOI | Venue |
|---|---|---|
2011 | 10.1093/nar/gkq1105 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
relational database,sequence alignment,systems integration,protein conformation,proteins | Structural genomics,Biology,PDBREPORT,Parsing,Multiple sequence alignment,Protein Data Bank,Protein secondary structure,Protein Data Bank (RCSB PDB),Database,DSSP (hydrogen bond estimation algorithm) | Journal |
Volume | Issue | ISSN |
39 | Database-Issue | 0305-1048 |
Citations | PageRank | References |
34 | 1.83 | 25 |
Authors | ||
8 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Robbie P. Joosten | 1 | 59 | 3.63 |
| Tim A. H. te Beek | 2 | 80 | 4.45 |
| Elmar Krieger | 3 | 72 | 5.02 |
| Maarten L. Hekkelman | 4 | 110 | 7.34 |
| Rob W. W. Hooft | 5 | 58 | 5.56 |
| Reinhard Schneider | 6 | 34 | 1.83 |
| Chris Sander | 7 | 387 | 110.73 |
| Gert Vriend | 8 | 396 | 52.26 |