Title | ||
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T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes. |
Abstract | ||
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Researchers are finding it more and more difficult to follow the changing status of disease candidate genes due to the exponential increase in gene mapping studies. The Text-mined Hypertension, Obesity and Diabetes candidate gene database (T-HOD) is developed to help trace existing research on three kinds of cardiovascular diseases: hypertension, obesity and diabetes, with the last disease categorized into Type 1 and Type 2, by regularly and semiautomatically extracting HOD-related genes from newly published literature. Currently, there are 837, 835 and 821 candidate genes recorded in T-HOD for hypertension, obesity and diabetes, respectively. T-HOD employed the state-of-art text-mining technologies, including a gene/disease identification system and a disease-gene relation extraction system, which can be used to affirm the association of genes with three diseases and provide more evidence for further studies. The primary inputs of T-HOD are the three kinds of diseases, and the output is a list of disease-related genes that can be ranked based on their number of appearance, protein-protein interactions and single-nucleotide polymorphisms. Unlike manually constructed disease gene databases, the content of T-HOD is regularly updated by our text-mining system and verified by domain experts. The interface of T-HOD facilitates easy browsing for users and allows T-HOD curators to verify data efficiently. We believe that T-HOD can help life scientists in search for more disease candidate genes in a less time-and effort-consuming manner. |
Year | DOI | Venue |
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2013 | 10.1093/database/bas061 | DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION |
Keywords | Field | DocType |
obesity,database,diabetes mellitus,data mining,software design | Data mining,Diabetes mellitus,Disease,Gene,Candidate gene,Computer science,Identification system,Gene mapping,Obesity,Bioinformatics,Database,Relationship extraction | Journal |
Volume | ISSN | Citations |
2013 | 1758-0463 | 3 |
PageRank | References | Authors |
0.41 | 8 | 5 |
Name | Order | Citations | PageRank |
---|---|---|---|
Hong-Jie Dai | 1 | 288 | 21.58 |
Johnny Chi-Yang Wu | 2 | 44 | 2.30 |
Richard Tzong-Han Tsai | 3 | 714 | 54.89 |
Wen-Harn Pan | 4 | 44 | 3.76 |
Wen-Lian Hsu | 5 | 1701 | 198.40 |