Name
Abstract | ||
|---|---|---|
GetBonNie is a web-based application for building, analyzing and sharing rule-based models encoded in the BioNetGen language (BNGL). Tools accessible within the GetBonNie environment include (i) an applet for drawing graphs that correspond to BNGL code; (ii) a network-generation engine for translating a set of rules into a chemical reaction network; (iii) simulation engines that implement generate-first, on-the-fly and network-free methods for simulating rule-based models; and (iv) a database for sharing models, parameter values, annotations, simulation tasks and results.GetBonNie is free at (http://getbonnie.org). |
Year | DOI | Venue |
|---|---|---|
2009 | 10.1093/bioinformatics/btp173 | Bioinformatics |
Keywords | Field | DocType |
bngl code,rule-based model,network-generation engine,network-free method,simulation task,chemical reaction network,parameter value,getbonnie environment,simulation engine,bionetgen language,computer simulation,internet | Graph,Data mining,Rule-based system,Computer science,Expert system,Software,Java applet,The Internet | Journal |
Volume | Issue | ISSN |
25 | 11 | 1367-4811 |
Citations | PageRank | References |
5 | 0.52 | 9 |
Authors | ||
5 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Bin Hu | 1 | 5 | 0.52 |
| G Matthew Fricke | 2 | 23 | 4.35 |
| James R Faeder | 3 | 409 | 31.02 |
| Richard G. Posner | 4 | 59 | 4.72 |
| William S. Hlavacek | 5 | 277 | 24.15 |