Name
Title | ||
|---|---|---|
CONREAL web server: identification and visualization of conserved transcription factor binding sites. |
Abstract | ||
|---|---|---|
The use of orthologous sequences and phylogenetic footprinting approaches have become popular for the recognition of conserved and potentially functional sequences. Several algorithms have been developed for the identification of conserved transcription factor binding sites (TFBSs), which are characterized by their relatively short and degenerative recognition sequences. The CONREAL (conserved regulatory elements anchored alignment) web server provides a versatile interface to CONREAL-, LAGAN-, BLASTZ- and AVID-based predictions of conserved TFBSs in orthologous promoters. Comparative analysis using different algorithms can be started by keyword without any prior sequence retrieval. The interface is available at http://conreal.niob.knaw.nl. |
Year | DOI | Venue |
|---|---|---|
2005 | 10.1093/nar/gki378 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
algorithms,conserved sequence,internet,transcription factors,binding sites,computer graphics,comparative analysis,binding site,transcription factor binding site,gene expression regulation,nucleic | Promoter,Conserved sequence,Binding site,Phylogenetic footprinting,DNA binding site,Biology,Genetics,Molecular biology,Transcription factor,Web server,Sequence analysis | Journal |
Volume | Issue | ISSN |
33 | SUPnan | 0305-1048 |
Citations | PageRank | References |
24 | 4.12 | 5 |
Authors | ||
3 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Eugene Berezikov | 1 | 26 | 5.01 |
| Victor Guryev | 2 | 26 | 5.53 |
| Edwin Cuppen | 3 | 28 | 5.41 |