Name
Abstract | ||
|---|---|---|
Prot-2S is a bioinformatics web application devised to analyse the protein chain secondary structures (2S) (http:/ /www.requimte.pt:8080/Prot-2S/). The tool is built on the RCSB Protein Data Bank PDB and DSSP application/files and includes calculation/graphical display of amino acid propensities in 2S motifs based on any user amino acid classification/code (for any particular protein chain list). The interface can calculate the 2S composition, display the 2S subsequences and search for DSSP non-standard residues and for pairs/triplets/quadruplets (amino acid patterns in 2S motifs). This work presents some Prot-2S applications showing its usefulness in protein research and as an e-learning tool as well. |
Year | DOI | Venue |
|---|---|---|
2009 | 10.1504/IJBRA.2009.027513 | IJBRA |
Keywords | Field | DocType |
protein secondary structure,bioinformatics,electronic learning | Protein structure prediction,Amino acid,Computer science,Bioinformatics,Web application,Protein Data Bank,Protein secondary structure,Protein Data Bank (RCSB PDB),DSSP (hydrogen bond estimation algorithm),Python (programming language) | Journal |
Volume | Issue | Citations |
5 | 4 | 0 |
PageRank | References | Authors |
0.34 | 5 | 2 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Cristian R. Munteanu | 1 | 100 | 10.27 |
| Alexandre Magalhães | 2 | 1 | 1.06 |