Name
Abstract | ||
|---|---|---|
BioWarehouse is an open-source project for integrating bioinformatics databases within a relational database warehouse. It has two key features. A comprehensive database schema models many different bioinformatics datatypes. A set of loader tools permits loading of public bioinformatics databases, and of standard bioinformatics formats, into that database schema. Thus, multiple databases can be queried together within a single common schema. The supported databases are BioCyc, CMR, ENZYME, Eco2DBase, Genbank, Gene Ontology, KEGG, NCBI Taxonomy, and UniProt. The supported formats are BioPAX (protein interactions subset only) and MAGE-ML. |
Year | DOI | Venue |
|---|---|---|
2008 | 10.1007/978-3-540-69828-9_2 | DILS |
Keywords | Field | DocType |
gene ontology,public bioinformatics databases,single common schema,different bioinformatics datatypes,database schema,comprehensive database schema model,bioinformatics databases,standard bioinformatics format,relational database warehouse,multiple databases,eleven bioinformatics databases,relational integration,relational database,enzyme | Data mining,Relational database,Database model,UniProt,Computer science,Database schema,KEGG,Bioinformatics,GenBank,Schema (psychology),Database,BioPAX : Biological Pathways Exchange | Conference |
Volume | ISSN | Citations |
5109 | 0302-9743 | 2 |
PageRank | References | Authors |
0.43 | 2 | 3 |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Peter D. Karp | 1 | 1974 | 622.10 |
| Thomas J. Lee | 2 | 353 | 24.14 |
| Valerie Wagner | 3 | 104 | 4.13 |