Name
Title | ||
|---|---|---|
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. |
Abstract | ||
|---|---|---|
Enabling data analysis in large data depositories for high throughput experimental data such as gene microarrays and ChIP-seq is challenging. In this paper, we discuss three methods for integrating QUEST, a data depository for epigenetic experiments, with a web-based data analysis platform GenePattern. These methods are universal and can serve as an exemplary implementation resolving the dilemma facing many similar database systems in integrating data analysis tools. |
Year | DOI | Venue |
|---|---|---|
2009 | 10.1109/BIBM.2009.84 | BIBM |
Keywords | Field | DocType |
similar database system,high-throughput data,large data depository,enabling data analysis,case study,web-based data analysis platform,data depository,web-based analysis platform,exemplary implementation,gene microarrays,data analysis tool,high throughput experimental data,epigenetic experiment,database systems,data analysis,high throughput,chip seq,molecular biophysics,bioinformatics,servers,database system,chip,data mining,biomedical research,genetics,pipelines | Data science,Analysis tools,Experimental data,Computer science,Server,Throughput,Bioinformatics,Web application | Conference |
Volume | Issue | ISSN |
1-4 | Nov 2009 | 2156-1125 |
Citations | PageRank | References |
0 | 0.34 | 0 |
Authors | ||
11 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Terry Camerlengo | 1 | 0 | 1.01 |
| Hatice Gulcin Ozer | 2 | 32 | 4.02 |
| Pearlly Yan | 3 | 82 | 4.28 |
| Jeffrey Parvin | 4 | 14 | 1.51 |
| Tim Huang | 5 | 0 | 0.34 |
| Kun Huang | 6 | 530 | 61.18 |
| Francisco Perez | 7 | 0 | 0.34 |
| Mingxiang Teng | 8 | 0 | 0.34 |
| Lang Li | 9 | 0 | 1.01 |
| Yunlong Liu | 10 | 0 | 0.34 |
| Tahsin M. Kurç | 11 | 1423 | 149.77 |