Paper Info
Title
SWISS-TANDEM: A Web-Based Workspace for MS/MS Protein Identification on PC Grids
Abstract
Tandem mass spectrometry is a powerful technique for the identification of proteins contained in a biological sample. We present a grid-based application service for the analysis of tandem mass spectra, based on the open-source X!Tandem algorithm. The implemented parallelization strategy allows the distribution of analysis jobs to a grid of desktop PCs, utilizing their idle capacity. For this application service, a user-friendly project-oriented frontend was developed, implemented as a web-based workspace. After analysis, results are visualized and presented to the user along with a set of powerful and novel tools to allow further interpretation and evaluation of search results.
Year
DOI
Venue
2007
10.1109/CBMS.2007.103
Maribor
Keywords
Field
DocType
application service,tandem algorithm,biological sample,analysis job,web-based workspace,desktop pcs,powerful technique,idle capacity,ms protein identification,pc grids,tandem mass spectrometry,tandem mass spectrum,grid-based application service,databases,grid computing,proteomics,human computer interaction,workspace,mass spectroscopy,visualization,mass spectra,molecular biophysics,concurrent computing,algorithm design and analysis,biochemistry,proteins,parallel processing,data visualisation,public domain software,internet
Data mining,Tandem,Data visualization,Grid computing,Algorithm design,Workspace,Computer science,Theoretical computer science,Web application,Concurrent computing,Computer hardware,Grid
Conference
ISSN
ISBN
Citations 
1063-7125
0-7695-2905-4
0
PageRank 
References 
Authors
0.34
2
4
Name
Order
Citations
PageRank
Dominique Zosso127316.60
Konstantin Arnold261.55
Torsten Schwede350042.56
Michael Podvinec4112.50