Title
Blue Gene: a vision for protein science using a petaflop supercomputer
Abstract
In December 1999, IBM announced the start of a five-year effort to build a massively parallel computer, to be applied to the study of biomolecular phenomena such as protein folding. The project has two main goals: to advance our understanding of the mechanisms behind protein folding via large-scale simulation, and to explore novel ideas in massively parallel machine architecture and software. This project should enable biomolecular simulations that are orders of magnitude larger than current technology permits. Major areas of investigation include: how to most effectively utilize this novel platform to meet our scientific goals, how to make such massively parallel machines more usable, and how to achieve performance targets, with reasonable cost, through novel machine architectures. This paper provides an overview of the Blue Gene project at IBM Research. It includes some of the plans that have been made, the intended goals, and the anticipated challenges regarding the scientific work, the software application, and the hardware design.
Year
DOI
Venue
2001
10.1147/sj.402.0310
IBM Systems Journal
Keywords
Field
DocType
parallel computer,novel idea,protein folding,ibm research,petaflop supercomputer,parallel machine,novel machine architecture,protein science,novel platform,parallel machine architecture,blue gene project,biomolecular phenomenon
USable,IBM,Software engineering,Supercomputer,Massively parallel,Computer science,Blue gene,Software,Database,Machine architecture
Journal
Volume
Issue
ISSN
40
2
0018-8670
Citations 
PageRank 
References 
103
12.55
4
Authors
52
Search Limit
100103
Name
Order
Citations
PageRank
Frances E. Allen110312.55
G. Almasi217723.28
W. Andreoni310415.55
Daniel K. Beece410312.55
Bruce J. Berne521426.88
Arthur A. Bright628739.25
José R. Brunheroto737146.72
Calin Cascaval81446122.48
José G. Castaños946855.03
P. Coteus1023623.07
Paul Crumley1132647.81
Alessandro Curioni1227939.87
M. Denneau1310512.96
Wilm E. Donath1410312.55
M. Eleftheriou1515721.28
B. G. Fitch1618425.33
Bruce M. Fleischer1710412.92
C. J. Georgiou1811819.08
Robert S. Germain1910312.55
Mark Giampapa2010312.55
Donna L. Gresh2110312.55
Manish Gupta22135898.09
Ruud A. Haring2310312.55
C. T. Howard Ho2410312.55
Peter H. Hochschild2525838.16
Susan Flynn Hummel2610312.55
Tiziana Jonas2710312.88
D. Lieber2841236.00
Glenn J. Martyna2910312.55
Kiran K. Maturu3010312.55
José E. Moreira312282230.26
Dennis M. Newns3210312.55
Matthew Newton3310312.55
Robert Philhower3410514.68
T. Picunko3512213.97
Jed W. Pitera3610312.55
Michael Pitman3710312.55
Rick A. Rand3810312.55
Ajay K. Royyuru3910312.55
V. Salapura4013516.42
Alda Sanomiya4135145.74
Rahul S. Shah4210312.55
Y. Sham4312415.84
S. Singh4421823.72
Marc Snir4511513.52
F. Suits4620129.82
R. Swetz4714416.18
W. C. Swope4830130.04
Nagesh K. Vishnumurthy4910312.55
T. J. C. Ward5020528.66
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