Paper Info
Title
GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.
Abstract
Analyzing the networks of interactions between genes and proteins has become a central theme in systems biology. Versatile software tools for interactively displaying and analyzing these networks are therefore very much in demand. The public-domain open software environment Cytoscape has been developed with the goal of facilitating the design and development of such software tools by the scientific community.We present GenePro, a plugin to Cytoscape featuring a set of versatile tools that greatly facilitates the visualization and analysis of protein networks derived from high-throughput interactions data and the validation of various methods for parsing these networks into meaningful functional modules.The GenePro plugin is available at the website http://genepro.ccb.sickkids.ca.
Year
DOI
Venue
2006
10.1093/bioinformatics/btl356
Bioinformatics
Keywords
Field
DocType
software tool,central theme,high-throughput interactions data,scientific community,versatile software tool,versatile tool,protein network,public-domain open software environment,interaction network,advanced visualization,genepro plugin,meaningful functional module,plugin,module,bioinformatics,system biology,visualisation,gene,gen,network,network analysis,modulo,high throughput,gene cluster,public domain,visualization,exploration,interaction
Data mining,World Wide Web,Visualization,Modulo,Computer science,Systems biology,Software,Network analysis,Plug-in,Bioinformatics,Parsing,Open software
Journal
Volume
Issue
ISSN
22
17
1367-4811
Citations 
PageRank 
References 
16
1.48
2
Authors
7
Name
Order
Citations
PageRank
James Vlasblom11396.96
Samuel Wu2733.56
Shuye Pu3373.87
Mark Superina4161.48
Gina Liu5161.48
Chris Orsi6161.48
S J Wodak750295.66