Name
Abstract | ||
|---|---|---|
As microbial ecologists take advantage of high-throughput analytical techniques to describe microbial communities across everincreasing numbers of samples, the need for new analysis tools that reveal the intrinsic spatial patterns and structures of these populations is crucial. Here we present SitePainter, an interactive graphical tool that allows investigators to create or upload pictures of their study site, load diversity analyses data and display both diversity and taxonomy results in a spatial context. Features of SitePainter include: visualizing alpha-diversity, using taxonomic summaries; visualizing beta-diversity, using results from multidimensional scaling methods; and animating relationships among microbial taxa or pathways overtime. SitePainter thus increases the visual power and ability to explore spatially explicit studies. Availability: https://sourceforge. net/projects/sitepainter |
Year | DOI | Venue |
|---|---|---|
2012 | 10.1093/bioinformatics/btr685 | BIOINFORMATICS |
Keywords | Field | DocType |
metagenomics,bacteria,metagenome | Analysis tools,Multidimensional scaling,Computer science,Upload,Metagenomics,Bioinformatics,Spatial contextual awareness,Spatial ecology | Journal |
Volume | Issue | ISSN |
28 | 3 | 1367-4803 |
Citations | PageRank | References |
0 | 0.34 | 0 |
Authors | ||
5 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Antonio Gonzalez | 1 | 0 | 0.34 |
| Jesse Stombaugh | 2 | 16 | 2.22 |
| Christian L Lauber | 3 | 2 | 0.86 |
| Noah Fierer | 4 | 2 | 1.19 |
| Rob Knight | 5 | 366 | 26.19 |