Name
Abstract | ||
|---|---|---|
Marker2sequence (M2S) aims at mining quantitative trait loci (QTLs) for candidate genes. For each gene, within the QTL region, M2S uses data integration technology to integrate putative gene function with associated gene ontology terms, proteins, pathways and literature. As a typical QTL region easily contains several hundreds of genes, this gene list can then be further filtered using a keyword-based query on the aggregated annotations. M2S will help breeders to identify potential candidate genes for their traits of interest.Marker2sequence is freely accessible at http://www.plantbreeding.wur.nl/BreeDB/marker2seq/. The source code can be obtained at https://github.com/PBR/Marker2Sequence.richard.finkers@wur.nl |
Year | DOI | Venue |
|---|---|---|
2012 | 10.1093/bioinformatics/bts298 | Bioinformatics |
Keywords | Field | DocType |
associated gene ontology term,supplementary data,putative gene function,qtl region,potential candidate gene,gene list,nl supplementary information,m2s uses data integration,typical qtl region,candidate gene | Data integration,Data mining,Quantitative trait locus,Gene,Candidate gene,Biology,Source code,Whole genome sequencing,Family-based QTL mapping,Bioinformatics,Genetics,Putative gene | Journal |
Volume | Issue | ISSN |
28 | 14 | 1367-4811 |
Citations | PageRank | References |
1 | 0.63 | 4 |
Authors | ||
4 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Pierre-Yves Chibon | 1 | 8 | 1.43 |
| Heiko Schoof | 2 | 46 | 12.82 |
| Richard G F Visser | 3 | 1 | 0.63 |
| Richard Finkers | 4 | 4 | 4.16 |