Title
The environment ontology: contextualising biological and biomedical entities.
Abstract
As biological and biomedical research increasingly reference the environmental context of the biological entities under study, the need for formalisation and standardisation of environment descriptors is growing. The Environment Ontology (ENVO; http://www.environmentontology.org) is a community-led, open project which seeks to provide an ontology for specifying a wide range of environments relevant to multiple life science disciplines and, through an open participation model, to accommodate the terminological requirements of all those needing to annotate data using ontology classes. This paper summarises ENVO's motivation, content, structure, adoption, and governance approach. The ontology is available from http://purl.obolibrary.org/obo/envo.owl - an OBO format version is also available by switching the file suffix to "obo".
Year
DOI
Venue
2013
10.1186/2041-1480-4-43
J. Biomedical Semantics
Keywords
Field
DocType
ontology,biome,bioinformatics,ecosystem,habitat,information science,environment,ecology,niche,biomedical research
Ontology (information science),Data science,Ontology-based data integration,Ontology,Data mining,Process ontology,Computer science,Open Biomedical Ontologies,Information science,Suggested Upper Merged Ontology,Upper ontology
Journal
Volume
Issue
ISSN
4
1
2041-1480
Citations 
PageRank 
References 
37
2.32
11
Authors
5
Name
Order
Citations
PageRank
Pier Luigi Buttigieg1837.85
Norman Morrison214612.33
Barry Smith392891.98
Christopher J. Mungall472456.41
Suzanna E. Lewis539124.32