Name
Title | ||
|---|---|---|
CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data. |
Abstract | ||
|---|---|---|
CARPET (collection of automated routine programs for easy tiling) is a set of Perl, Python and R scripts, integrated on the Galaxy2 web-based platform, for the analysis of ChIP-chip and expression tiling data, both for standard and custom chip designs. CARPET allows rapid experimental data entry, simple quality control, normalization, easy identification and annotation of enriched ChIP-chip regions, detection of the absolute or relative transcriptional status of genes assessed by expression tiling experiments and, more importantly, it allows the integration of ChIP-chip and expression data. Results can be visualized instantly in a genomic context within the UCSC genome browser as graph-based custom tracks through Galaxy2. All generated and uploaded data can be stored within sessions and are easily shared with other users. |
Year | DOI | Venue |
|---|---|---|
2008 | 10.1093/bioinformatics/btn542 | BIOINFORMATICS |
Keywords | Field | DocType |
chip,quality control | Annotation,Genome browser,Computer science,Chip,Software,Bioinformatics,Web application,Perl,Python (programming language),Scripting language | Journal |
Volume | Issue | ISSN |
24 | 24 | 1367-4803 |
Citations | PageRank | References |
3 | 0.53 | 1 |
Authors | ||
5 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Matteo Cesaroni | 1 | 3 | 0.53 |
| Davide Cittaro | 2 | 25 | 1.24 |
| Alessandro Brozzi | 3 | 17 | 2.35 |
| Pier Giuseppe Pelicci | 4 | 7 | 2.76 |
| Lucilla Luzi | 5 | 5 | 1.34 |