Title
Bit-parallel (delta, gamma)-matching and suffix automata
Abstract
(δ,γ)-matching is a string matching problem with applications to music retrieval. The goal is, given a pattern P1…m and a text T1…n on an alphabet of integers, find the occurrences P′ of the pattern in the text such that (i) ∀1⩽i⩽m,|Pi−Pi′|⩽δ, and (ii) ∑1⩽i⩽m|Pi−Pi′|⩽γ. The problem makes sense for δ⩽γ⩽δm. Several techniques for (δ,γ)-matching have been proposed, based on bit-parallelism or on skipping characters. We first present an O(mnlog(γ)/w) worst-case time and O(n) average-case time bit-parallel algorithm (being w the number of bits in the computer word). It improves the previous O(mnlog(δm)/w) worst-case time algorithm of the same type. Second, we combine our bit-parallel algorithm with suffix automata to obtain the first algorithm that skips characters using both δ and γ. This algorithm examines less characters than any previous approach, as the others do just δ-matching and check the γ-condition on the candidates. We implemented our algorithms and drew experimental results on real music, showing that our algorithms are superior to current alternatives with high values of δ.
Year
DOI
Venue
2005
10.1016/j.jda.2004.08.005
Journal of Discrete Algorithms
Keywords
DocType
Volume
Bit-parallelism,Approximate string matching,MIDI music retrieval
Journal
3
Issue
ISSN
Citations 
2
1570-8667
7
PageRank 
References 
Authors
0.66
14
5
Name
Order
Citations
PageRank
Maxime Crochemore12655281.75
Costas S. Iliopoulos21534167.43
Gonzalo Navarro364735.74
Yoan J. Pinzon415816.81
Alejandro Salinger515112.53