Name
Abstract | ||
|---|---|---|
The Ribosomal Database Project (RDP) provides researchers with quality-controlled bacterial and archaeal small subunit rRNA alignments and analysis tools. An improved alignment strategy uses the Infernal secondary structure aware aligner to provide a more consistent higher quality alignment and faster processing of user sequences. Substantial new analysis features include a new Pyrosequencing Pipeline that provides tools to support analysis of ultra high-throughput rRNA sequencing data. This pipeline offers a collection of tools that automate the data processing and simplify the computationally intensive analysis of large sequencing libraries. In addition, a new Taxomatic visualization tool allows rapid visualization of taxonomic inconsistencies and suggests corrections, and a new class Assignment Generator provides instructors with a lesson plan and individualized teaching materials. Details about RDP data and analytical functions can be found at http://rdp.cme.msu.edu/. |
Year | DOI | Venue |
|---|---|---|
2009 | 10.1093/nar/gkn879 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
computer graphics,secondary structure,data processing,sequence alignment,internet,high throughput | Analysis tools,mothur,Data processing,Lesson plan,Biology,Ribosomal RNA,Visualization,Software,Computer graphics,Database | Journal |
Volume | Issue | ISSN |
37 | Database-Issue | 0305-1048 |
Citations | PageRank | References |
83 | 6.91 | 8 |
Authors | ||
11 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| J R Cole | 1 | 331 | 69.86 |
| Qiong Wang | 2 | 282 | 38.46 |
| E. Cardenas | 3 | 104 | 11.46 |
| Jordan A. Fish | 4 | 83 | 6.91 |
| Benli Chai | 5 | 179 | 20.66 |
| Ryan J. Farris | 6 | 248 | 52.37 |
| A. S. Kulam-Syed-Mohideen | 7 | 104 | 11.46 |
| Donna M. McGarrell | 8 | 238 | 31.93 |
| Terry L. Marsh | 9 | 124 | 27.85 |
| George M. Garrity | 10 | 264 | 60.61 |
| James M. Tiedje | 11 | 295 | 63.36 |