Title
Using the biological taxonomy to access biological literature with PathBinderH.
Abstract
PathBinderH allows users to make queries that retrieve sentences and the abstracts containing them from PubMed. Another aspect of PathBinderH is that users can specify biological taxa in order to limit searches by mentioning either the specified taxa, or their subordinate taxa, in the biological taxonomy. Although the current project requires this function only for plant taxa, the principle is extensible to the entire taxonomy.www.plantgenomics.iastate.edu/PathBinderH. Source code and databases on request.
Year
DOI
Venue
2005
10.1093/bioinformatics/bti381
Bioinformatics
Keywords
Field
DocType
plant taxon,contact: berleant@iastate.edu supplementary information: a tutorial is at the tool website. a longer paper is at class.ee.iastate.edu/berleant/s/ paperpathbinderhreport.pdf,entire taxonomy,longer paper,current project,biological taxon,subordinate taxon,biological literature,source code,specified taxon,biological taxonomy,supplementary information
Data mining,Computer science,Source code,Biological taxonomy,Taxonomy (biology),Bioinformatics,Taxon
Journal
Volume
Issue
ISSN
21
10
1367-4803
Citations 
PageRank 
References 
5
0.61
6
Authors
9
Name
Order
Citations
PageRank
J. Ding1212.80
K. Viswanathan250.61
D. Berleant3172.81
L. Hughes450.61
Eve Syrkin Wurtele5241.62
D. Ashlock6231.80
Julie A Dickerson715311.27
A. Fulmer850.61
P. S. Schnable9112.22