Title
Characterizing gene sets with FuncAssociate.
Abstract
FuncAssociate is a web-based tool to help researchers use Gene Ontology attributes to characterize large sets of genes derived from experiment. Distinguishing features of FuncAssociate include the ability to handle ranked input lists, and a Monte Carlo simulation approach that is more appropriate to determine significance than other methods, such as Bonferroni or Sidak p-value correction. FuncAssociate currently supports 10 organisms (Vibrio cholerae, Shewanella oneidensis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Arabidopsis thaliana, Caenorhaebditis elegans, Drosophila melanogaster, Mus musculus, Rattus norvegicus and Homo sapiens).
Year
DOI
Venue
2003
10.1093/bioinformatics/btg363
BIOINFORMATICS
Keywords
Field
DocType
monte carlo simulation,simulation,bacteria,bioinformatics,gen,gene,thallophyta,method,source code
Drosophilidae,Data mining,Homo sapiens,Gene,Bonferroni correction,Biology,Botany,Schizosaccharomyces pombe,Shewanella oneidensis,Computational biology,Drosophila melanogaster,Perl
Journal
Volume
Issue
ISSN
19
18.0
1367-4803
Citations 
PageRank 
References 
147
16.35
1
Authors
5
Search Limit
100147
Name
Order
Citations
PageRank
Gabriel F. Berriz119319.86
Oliver D. King232534.93
Barbara Bryant314716.69
Chris Sander414716.35
Frederick P Roth534534.18