Name
Abstract | ||
|---|---|---|
The genomes of many species are dominated by short sequences repeated consecutively. It is estimated that over 10% of the human genome consists of tandemly repeated sequences. Finding repeated regions in long sequences is important in sequence analysis. We develop a software, LocRepeat, that finds regions of pseudo-periodic repeats in a long sequence. We use the definition of Li et al. 1 for the pseudo-periodic partition of a region and extend the algorithm that can select the repeated region from a given long sequence and give the pseudo-periodic partition of the region. |
Year | DOI | Venue |
|---|---|---|
2006 | 10.1186/1748-7188-1-2 | Algorithms for Molecular Biology |
Keywords | Field | DocType |
sequence analysis,algorithms,human genome,biomedical research,tandem repeat,bioinformatics | Genome,Tandem repeat,Biology,Direct repeat,Human genome,Bioinformatics,Partition (number theory),Periodic graph (geometry),Sequence analysis | Journal |
Volume | Issue | ISSN |
1 | 1 | 1748-7188 |
Citations | PageRank | References |
8 | 0.54 | 7 |
Authors | ||
2 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Xiaowen Liu | 1 | 88 | 6.51 |
| Lusheng Wang | 2 | 2433 | 224.97 |