Title
Ontologies in Biological Data Visualization
Abstract
In computer science, an ontology is essentially a graph-based knowledge representation in which each node corresponds to a concept and each edge specifies a relation between two concepts. Ontological development in biology can serve as a focus to discuss the challenges and possible research directions for ontologies in visualization. The principle challenges are the dynamic and evolving nature of ontologies, the ever-present issue of scale, the diversity and richness of the relationships in ontologies, and the need to better understand the relationship between ontologies and the data analysis tasks scientists wish to support. Research directions include visualizing ontologies; visualizing semantically or ontologically annotated texts, documents, and corpora; automated generation of visualizations using ontologies; and visualizing ontological context to support search. Although this discussion uses issues of ontologies in biological data visualization as a springboard, these topics are of general relevance to visualization.
Year
DOI
Venue
2014
10.1109/MCG.2014.33
Computer Graphics and Applications, IEEE  
Keywords
Field
DocType
biology computing,data analysis,data visualisation,graph theory,knowledge representation,ontologies (artificial intelligence),biological data visualization,computer science,corpora,data analysis tasks,graph-based knowledge representation,ontological development,ontologically annotated texts,ontology visualization,semantic text visualization,springboard,biological data visualization,computer graphics,network visualization,ontologically annotated texts,ontologies,visualization of ontologies
Data science,Ontology (information science),Knowledge representation and reasoning,Biological data visualization,Biological Ontologies,Information retrieval,Visualization,Computer science,Visual analytics,IDEF5,Ontology components
Journal
Volume
Issue
ISSN
34
2
0272-1716
Citations 
PageRank 
References 
3
0.38
6
Authors
9
Name
Order
Citations
PageRank
Sheelagh Carpendale14431251.97
Min Chen2129382.69
Daniel Evanko330.72
Nils Gehlenborg436336.48
Carsten Görg577147.19
Larry Hunter630.38
Francis Rowland7393.40
Margaret-Anne Storey82773208.42
Hendrik Strobelt938721.65