Name
Title | ||
|---|---|---|
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). |
Abstract | ||
|---|---|---|
PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB, The selection of representative chains can be dynamically configured according to the user's requirement, The WWW interface provides a large degree of freedom in setting parameters, such as cut-off scores of sequence and structural similarity, One can obtain a representative list and classification data of protein chains from the system, The current database includes 20 457 protein chains from PDB entries (August 6, 2000). The system for PDB-REPRDB is available at the Parallel Protein Information Analysis system (PAPIA) WWW server (http://www.rwcp.or.jp/ papia/). |
Year | DOI | Venue |
|---|---|---|
2001 | 10.1093/nar/29.1.219 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
internet,degree of freedom,protein data bank,information analysis,structural similarity,protein conformation,proteins,magnetic resonance spectroscopy | Protein structure database,Biology,Structural similarity,Protein Data Bank,Protein Data Bank (RCSB PDB),Database,Protein structure | Journal |
Volume | Issue | ISSN |
29 | 1.0 | 0305-1048 |
Citations | PageRank | References |
26 | 7.17 | 3 |
Authors | ||
3 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Tamotsu Noguchi | 1 | 146 | 26.12 |
| Hideo Matsuda | 2 | 241 | 55.02 |
| Yutaka Akiyama | 3 | 172 | 37.62 |