Name
Abstract | ||
|---|---|---|
Over the past decade, the number of polymers and their complexes with small molecules in the Protein Data Bank archive (PDB) has continued to increase significantly. To support scientific advancements and ensure the best quality and completeness of the data files over the next 10 years and beyond, the Worldwide PDB partnership that manages the PDB archive is developing a new deposition and annotation system. This system focuses on efficient data capture across all supported experimental methods. The new deposition and annotation system is composed of four major modules that together support all of the processing requirements for a PDB entry. In this article, we describe one such module called the Chemical Component Annotation Tool. This tool uses information from both the Chemical Component Dictionary and Biologically Interesting molecule Reference Dictionary to aid in annotation. Benchmark studies have shown that the Chemical Component Annotation Tool provides significant improvements in processing efficiency and data quality. Database URL: http://wwpdb.org |
Year | DOI | Venue |
|---|---|---|
2013 | 10.1093/database/bat079 | DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION |
Field | DocType | Volume |
Data mining,Data quality,Computer science,Data file,Protein Data Bank,Reference standards,Annotation,Information retrieval,Automatic identification and data capture,Bioinformatics,Molecular Sequence Annotation,Protein Data Bank (RCSB PDB),Database | Journal | 2013 |
ISSN | Citations | PageRank |
1758-0463 | 5 | 0.61 |
References | Authors | |
8 | 10 | |
Name | Order | Citations | PageRank |
|---|---|---|---|
| Jasmine Young | 1 | 343 | 21.42 |
| Zukang Feng | 2 | 2975 | 623.29 |
| Dimitris Dimitropoulos | 3 | 352 | 52.35 |
| Raul Sala | 4 | 42 | 3.83 |
| John Westbrook | 5 | 3507 | 670.85 |
| Marina Zhuravleva | 6 | 15 | 1.50 |
| Chenghua Shao | 7 | 15 | 1.50 |
| Martha Quesada | 8 | 222 | 13.42 |
| Ezra Peisach | 9 | 10 | 1.06 |
| Helen Berman | 10 | 3661 | 681.16 |