Name
Title | ||
|---|---|---|
Reas: Recovery Of Ancestral Sequences For Transposable Elements From The Unassembled Reads Of A Whole Genome Shotgun |
Abstract | ||
|---|---|---|
We describe an algorithm, ReAS, to recover ancestral sequences for transposable elements (TEs) from the unassembled reads of a whole genome shotgun. The main assumptions are that these TEs must exist at high copy numbers across the genome and must not be so old that they are no longer recognizable in comparison to their ancestral sequences. Tested on the japonka rice genome, ReAS was able to reconstruct all of the high copy sequences in the Repbase repository of known TEs, and increase the effectiveness of RepeatMasker in identifying TEs from genome sequences. |
Year | DOI | Venue |
|---|---|---|
2005 | 10.1371/journal.pcbi.0010043 | PLOS COMPUTATIONAL BIOLOGY |
Keywords | Field | DocType |
algorithms,genome sequence,whole genome shotgun,gene duplication,transposable element,copy number | Genome,Sequence alignment,Shotgun sequencing,Japonica rice,Biology,Transposable element,Genomic library,DNA Transposable Elements,Bioinformatics,Gene duplication,Genetics | Journal |
Volume | Issue | ISSN |
1 | 4 | 1553-734X |
Citations | PageRank | References |
18 | 1.31 | 0 |
Authors | ||
11 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Ruiqiang Li | 1 | 765 | 91.23 |
| Jia Ye | 2 | 30 | 2.21 |
| Songgang Li | 3 | 101 | 8.72 |
| Jun Wang | 4 | 420 | 25.60 |
| Yu-Jun Han | 5 | 18 | 1.65 |
| Jing Wang | 6 | 109 | 10.35 |
| Jian Wang | 7 | 302 | 48.27 |
| Huanming Yang | 8 | 18 | 1.31 |
| Jun Yu | 9 | 111 | 20.07 |
| Gane Ka-Shu Wong | 10 | 162 | 17.81 |
| Jun Wang | 11 | 9228 | 736.82 |