Title
Creating Individual Based Models of the Plankton Ecosystem
Abstract
The Virtual Ecology Workbench (VEW) is a suite of utilities for creating, executing and analysing biological models of the ocean. At its core is a mathematical language allowing individual plankters to be modelled using equations from laboratory experiments. The language uses conventional mathematical assignments and seven plankton-specific functions. A model consists of a number of different plankton species, each with different behaviour. The compiler produces Java classes which when executed perform a timestep-based, agent-based simulation. Each agent is a Lagrangian Ensemble agent [13] representing a dynamic number of individuals, (a sub-population), that follow the same trajectory. The agents are simulated in a virtual water column that can be anchored, or can drift with ocean currents. This paper shows how the language allows biological oceanographers to create models without the need of conventional programming, the benefits of this approach and some examples of the type of scientific experiments made possible.
Year
DOI
Venue
2007
10.1007/978-3-540-72584-8_15
International Conference on Computational Science (1)
Keywords
Field
DocType
plankton ecosystem,biological model,conventional programming,mathematical language,creating individual,dynamic number,conventional mathematical assignment,biological oceanographers,lagrangian ensemble agent,different plankton species,different behaviour,ocean current
Plankton,Virtual water,Workbench,Mathematical optimization,Suite,Computer science,Compiler,Language of mathematics,Ocean current,Artificial intelligence,Trajectory,Distributed computing
Conference
Volume
ISSN
Citations 
4487
0302-9743
1
PageRank 
References 
Authors
0.37
1
3
Name
Order
Citations
PageRank
Wes Hinsley110.37
Tony Field214418.45
John Woods310.37