Name
Abstract | ||
|---|---|---|
Modeling and simulation of a cellular system on computers are now becoming an essential process in biological researches. However, modern PCs can't provide enough performance to simulate large-scale biochemical networks. ReCSiP is the alternative FPGA-based solution for biochemical simulations. In this paper, the novel method of biochemical simulation with multiple reaction models on an FPGA is proposed. The method generates optimal circuit and its optimal schedule for each simulation models written in SBML, the standard markup language in systems biology. ReCSiP has a Xilinx's XC2VP70 and achieved over 20-fold speedup compared to Intelýs PentiumIII 1.13GHz. |
Year | DOI | Venue |
|---|---|---|
2005 | 10.1109/IPDPS.2005.103 | IPDPS |
Keywords | DocType | ISBN |
enough performance,alternative fpga-based solution,biochemical simulation,novel method,cellular system,optimal schedule,multi-model simulation method,simulation model,large-scale biochemical network,biochemical systems,optimal circuit,20-fold speedup,ode,biochemistry,systems biology,field programmable gate arrays,fpga,computational modeling,sbml,computer simulation,markup languages | Conference | 0-7695-2312-9 |
Citations | PageRank | References |
5 | 0.63 | 4 |
Authors | ||
9 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Yasunori Osana | 1 | 92 | 18.24 |
| Tomonori Fukushima | 2 | 32 | 5.49 |
| Masato Yoshimi | 3 | 106 | 22.49 |
| Yow Iwaoka | 4 | 20 | 2.94 |
| Yuichiro Shibata | 5 | 157 | 37.99 |
| Hiroaki Kitano | 6 | 3515 | 539.37 |
| Akira Funahashi | 7 | 264 | 20.32 |
| Noriko Hiroi1 | 8 | 42 | 7.11 |
| Hideharu Amano | 9 | 1375 | 210.21 |