Title
Robust measurement selection for biochemical pathway experimental design.
Abstract
As a general lack of quantitative measurement data for pathway modelling and parameter identification process, time-series experimental design is particularly important in current systems biology research. This paper mainly investigates state measurement/observer selection problem when parametric uncertainties are considered. Based on the extension of optimal design criteria, two robust experimental design strategies are investigated, one is the regularisation-based design method, and the other is Taguchi-based design approach. By implementing to a simplified IkappaBalpha - NF - kappaB signalling pathway system, two design approaches are comparatively studied. When large parametric uncertainty is present, by assuming that different parametric uncertainties are identical in scale, two methods tend to provide a similar uniform design result.
Year
DOI
Venue
2008
10.1504/IJBRA.2008.021176
IJBRA
Keywords
Field
DocType
time-seriesexperimental design,robust experimental design strategy,biochemical pathway experimental design,regularisation-based design method,similar uniform design result,b signallingpathway system,taguchi-based design approach,large parametric uncertainty,design approach,thatdifferent parametric uncertainty,robust measurement selection,current systemsbiology research,systems biology,experimental design,bioinformatics,taguchi methods,optimal design,sensitivity analysis
Econometrics,Mathematical optimization,Robust design,Uniform design,Biology,Systems biology,Optimal design,Parametric statistics,Taguchi methods,Observer (quantum physics),Genetics
Journal
Volume
Issue
ISSN
4
4
1744-5485
Citations 
PageRank 
References 
4
0.59
5
Authors
3
Name
Order
Citations
PageRank
M Brown110615.73
Fei He23213.85
Lam Fat Yeung3205.39