Paper Info
Title
R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.
Abstract
The R3D Align web server provides online access to 'RNA 3D Align' (R3D Align), a method for producing accurate nucleotide-level structural alignments of RNA 3D structures. The web server provides a streamlined and intuitive interface, input data validation and output that is more extensive and easier to read and interpret than related servers. The R3D Align web server offers a unique Gallery of Featured Alignments, providing immediate access to pre-computed alignments of large RNA 3D structures, including all ribosomal RNAs, as well as guidance on effective use of the server and interpretation of the output. By accessing the non-redundant lists of RNA 3D structures provided by the Bowling Green State University RNA group, R3D Align connects users to structure files in the same equivalence class and the best-modeled representative structure from each group. The R3D Align web server is freely accessible at http://rna.bgsu.edu/r3dalign/.
Year
DOI
Venue
2013
10.1093/nar/gkt417
NUCLEIC ACIDS RESEARCH
Keywords
Field
DocType
rna,internet,nucleotides,sequence alignment
RNA,Data validation,Information retrieval,Biology,Server,Software,Ribosome,Bioinformatics,Genetics,Web server,The Internet
Journal
Volume
Issue
ISSN
41
W1
0305-1048
Citations 
PageRank 
References 
4
0.46
13
Authors
4
Name
Order
Citations
PageRank
Ryan R Rahrig1191.19
Anton I Petrov2444.40
Neocles B Leontis3916.13
Craig L Zirbel4604.96