Name
Abstract | ||
|---|---|---|
Gramene (www.gramene.org) is a curated resource for genetic, genomic and comparative genomics data for the major crop species, including rice, maize, wheat and many other plant (mainly grass) species. Gramene is an open-source project. All data and software are freely downloadable through the ftp site (ftp.gramene.org/pub/gramene) and available for use without restriction. Gramenes core data types include genome assembly and annotations, other DNA/mRNA sequences, genetic and physical maps/markers, genes, quantitative trait loci (QTLs), proteins, ontologies, literature and comparative mappings. Since our last NAR publication 2 years ago, we have updated these data types to include new datasets and new connections among them. Completely new features include rice pathways for functional annotation of rice genes; genetic diversity data from rice, maize and wheat to show genetic variations among different germplasms; large-scale genome comparisons among Oryza sativa and its wild relatives for evolutionary studies; and the creation of orthologous gene sets and phylogenetic trees among rice, Arabidopsis thaliana, maize, poplar and several animal species (for reference purpose). We have significantly improved the web interface in order to provide a more user-friendly browsing experience, including a dropdown navigation menu system, unified web page for markers, genes, QTLs and proteins, and enhanced quick search functions. |
Year | DOI | Venue |
|---|---|---|
2008 | 10.1093/nar/gkm968 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
genomics,genetic variation,web interface,databases,genetic diversity,genetics,web pages,plant,internet,data type,quantitative trait loci,genomes,genetic markers,poaceae,bioinformatics,phylogenetic tree,comparative genomics | Genome,Quantitative trait locus,Biology,Genetic diversity,Biotechnology,Oryza sativa,Genomics,Comparative genomics,Orthologous Gene,Computational biology,Genetics,Sequence assembly | Journal |
Volume | Issue | ISSN |
36 | Database issue | 0305-1048 |
Citations | PageRank | References |
30 | 4.33 | 13 |
Authors | ||
21 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| Chengzhi Liang | 1 | 89 | 10.56 |
| Pankaj Jaiswal | 2 | 180 | 30.06 |
| Claire Hebbard | 3 | 52 | 8.22 |
| Shuly Avraham | 4 | 58 | 8.82 |
| Edward Buckler | 5 | 121 | 18.68 |
| Terry M. Casstevens | 6 | 102 | 15.67 |
| Bonnie Hurwitz | 7 | 30 | 4.33 |
| Susan McCouch | 8 | 140 | 20.77 |
| Junjian Ni | 9 | 87 | 16.24 |
| anuradha pujar | 10 | 481 | 31.83 |
| Dean Ravenscroft | 11 | 30 | 4.33 |
| Liya Ren | 12 | 76 | 10.54 |
| S. White | 13 | 701 | 161.53 |
| Isaak Tecle | 14 | 36 | 4.92 |
| Jim Thomason | 15 | 48 | 6.04 |
| Chih-Wei Tung | 16 | 72 | 8.35 |
| Xuehong Wei | 17 | 75 | 7.85 |
| Immanuel Yap | 18 | 71 | 10.30 |
| Ken Youens-Clark | 19 | 141 | 17.11 |
| Doreen Ware | 20 | 268 | 36.91 |
| Lincoln D. Stein | 21 | 1555 | 247.25 |