Name
Abstract | ||
|---|---|---|
HSSP (http://www.sander.embl-ebi.ac.uk/hssp/) is a derived database merging structure (3-D) and sequence (1-D) information, For each protein of known 3D structure from the Protein Data Bank (PDB), we provide a multiple sequence alignment of putative homologues and a sequence profile characteristic of the protein family, centered on the known structure. The list of homologues is the result of an iterative database search in SWISS-PROT using a position-weighted dynamic programming method for sequence profile alignment (MaxHom). The database is updated frequently, The listed putative homologues are very likely to have the same 3D structure as the PDB protein to which they have been aligned. As a result, the database not only provides aligned sequence families, but also implies secondary and tertiary structures covering 33% of all sequences in SWISS-PROT. |
Year | DOI | Venue |
|---|---|---|
1998 | 10.1093/nar/26.1.313 | NUCLEIC ACIDS RESEARCH |
Keywords | Field | DocType |
protein structure,sequence alignment,multiple sequence alignment,protein conformation,proteins,protein data bank | Sequence alignment,Protein structure database,Structural alignment,Sequence database,Biology,Conserved Domain Database,Multiple sequence alignment,Protein Data Bank,Homology modeling,Database | Journal |
Volume | Issue | ISSN |
26 | 1 | 0305-1048 |
Citations | PageRank | References |
49 | 7.91 | 0 |
Authors | ||
3 | ||
Name | Order | Citations | PageRank |
|---|---|---|---|
| C Dodge | 1 | 49 | 7.91 |
| Reinhard Schneider 0002 | 2 | 149 | 38.04 |
| Chris Sander | 3 | 469 | 157.99 |