Title
Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System
Abstract
The information needed by biologists and physicians for research purposes is distributed over many heterogeneous sources. Integration systems provide a single, centralized and homogeneous interface for users to query multiple information sources simultaneously. The major limitation of integration systems, including mediator-based systems, is that the tasks involved in their creation and maintenance remain mainly manual. To address this limitation, we developed automated methods for facilitating the creation of a mediator-based system. We first implemented an automatic method for acquiring the local schemas of the sources to be integrated. We derived the global schema from the UMLS. Finally, we proposed schema-and instance-based approaches to mapping data elements from the local schemas to the global schema. To illustrate the applicability of our methods, we created a mediator-based system integrating eleven biomedical sources. This prototype is operational, available on the Internet (http://www.med.univ-rennes1.fr/cgi-bin/mougin/These/system.pl) and its evolution is managed semi-automatically.
Year
DOI
Venue
2008
10.1007/978-3-540-69828-9_7
DILS
Keywords
Field
DocType
local schema,heterogeneous source,mediator-based system,homogeneous interface,automatic methods,automatic method,global schema,major limitation,eleven biomedical source,integration system,integrating biomedical data sources,multiple information source,data integration,integrable system,data integrity,biomedicine
Data integration,Data mining,Global schema,Information retrieval,Data mapping,Homogeneous,Computer science,Biomedicine,Schema (psychology),Unified Medical Language System,Database,The Internet
Conference
Volume
ISSN
Citations 
5109
0302-9743
3
PageRank 
References 
Authors
0.38
27
6
Name
Order
Citations
PageRank
Fleur Mougin114122.58
Anita Burgun250657.91
Olivier Bodenreider32715226.05
Julie Chabalier4625.69
olivier loreal5141.76
Pierre Le Beux66520.68