Paper Info
Title
SoyMetDB: The soybean metabolome database
Abstract
SoyMetDB is a metabolomic database for soybean, developed to target the growing needs of the soybean community. The goal is to provide a one-stop web resource for integrating, mining and visualizing soybean metabolomic data, including identification and expression of various metabolites across different experiments and time courses. It incorporates GC-MS and LC-MS based metabolite-profiling data dynamically linked to metabolite information from other public metabolomic databases, including HMDB and Knapsack. SoyMetDB includes Arabidopsis metabolomic data for cross-species comparisons and can retrieve information including the expression patterns of various experiments for complete or partial metabolite name queries. It also incorporates a pathway viewer tool integrating the data from various experimental conditions and presenting them on the pathways to highlight the expressed metabolite, and identifies the most highly represented pathways for multiple metabolite queries. SoyMetDB can be accessed at http://soymetdb.org.
Year
DOI
Venue
2010
10.1109/BIBM.2010.5706563
BIBM
Keywords
Field
DocType
one stop web resource,database,glycine max,botany,multimedia databases,soybean,soybean metabolome database,metabolome,knapsack,metabolite,data visualisation,data mining,data visualization,soymetdb,bioinformatics,data integration,arabidopsis metabolomic data,soybean community,hmdb,metabolite profiling data,metabolomics,proteins,databases,stress,chemicals
Metabolome,Data integration,Data visualization,Computer science,Metabolomics,Bioinformatics,Metabolite,Database
Conference
ISSN
ISBN
Citations 
2156-1125
978-1-4244-8307-5
1
PageRank 
References 
Authors
0.39
1
8
Name
Order
Citations
PageRank
Trupti Joshi115317.95
Qiuming Yao2898.04
Levi D Franklin3151.40
Laurent Brechenmacher4151.40
Babu Valliyodan5212.55
Gary Stacey6483.71
Henry T. Nguyen7314.50
Dong Xu8797.65